Planaria EST Database


DrC_02485

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02485
         (875 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8ZM94|RCNA_SALTY  Nickel/cobalt efflux system rcnA             35   0.27 
sp|P44243|YF23_HAEIN  Hypothetical protein HI1523                  32   3.0  
sp|P07167|VIRAL_AGRTU  Limited host range virA protein (LHR ...    30   6.7  
sp|P28220|SORB_PIG  Sorbin                                         30   6.7  
sp|O14646|CHD1_HUMAN  Chromodomain-helicase-DNA-binding prot...    30   6.7  
>sp|Q8ZM94|RCNA_SALTY Nickel/cobalt efflux system rcnA
          Length = 288

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 573 NRHRDLDPDQDHRGTREVALEHTQDLDHIQDQDHNLHVLQEAVTN 707
           N H D D D DH    +    H  D DH  D DH+ H+  E  T+
Sbjct: 120 NHHHDHDHDHDHDHDHD----HDHDHDHDHDHDHHGHIHPEGATS 160
>sp|P44243|YF23_HAEIN Hypothetical protein HI1523
          Length = 296

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
 Frame = +2

Query: 17  IANDFINVLHEKQNDEDFNDL-----------VPMNERLMDTDYRHMEINEMNDFRSFSD 163
           I NDF        + +D N L           +P N RL   + +   IN++NDF+ + D
Sbjct: 81  IYNDFDGYAERLNHIDDINRLRQIIFNCLHGIIPKNGRL-SKEIKEEIINKINDFKGYKD 139

Query: 164 MNC 172
           +NC
Sbjct: 140 LNC 142
>sp|P07167|VIRAL_AGRTU Limited host range virA protein (LHR virA)
          Length = 835

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 27/88 (30%), Positives = 40/88 (45%)
 Frame = +3

Query: 609 RGTREVALEHTQDLDHIQDQDHNLHVLQEAVTNVLIKEVLLQGKVVLGRTVDLVVRPDLL 788
           R   E+AL+ TQ LD +Q        +      V I+EV+  G+V+LG      V P L 
Sbjct: 178 RPNTELALQITQSLDQLQ--------MSTNADKVAIQEVVRNGRVILG------VLPRL- 222

Query: 789 T*DLISKHLTISLVQINGVIDLIKYIFR 872
                  + T+ LVQ +G  +  K + R
Sbjct: 223 -------NETVKLVQASGTFENTKKLQR 243
>sp|P28220|SORB_PIG Sorbin
          Length = 153

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 23/111 (20%), Positives = 37/111 (33%)
 Frame = +2

Query: 146 FRSFSDMNCSNSDYSFHHTPSQYGLSPPHCSPRMSNQRSLLGSPWEEYRHPTFTXXXXXX 325
           F+    ++  + D   ++TP  Y                L  SP+    HP         
Sbjct: 21  FKQIHMVHKPDDDTKMYNTPYTYNAG-------------LYNSPYSAQSHPAAKTQTYRP 67

Query: 326 XXXXXXFSSNSRIVPSLLGVPPRHLPPKVTPLMSLDVSNNFKRHPNPRTKR 478
                  +       +   VPP H+PP V PL   D S+  K   +P  ++
Sbjct: 68  LSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDRDPPDRK 118
>sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1 (CHD-1)
          Length = 1709

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 576  RHRDLDP--DQDHRGTREVALEHTQDLDHIQDQDHNLH 683
            +HR LD    +DHR   E +L+     DH    DH LH
Sbjct: 1603 KHRKLDDHRSRDHRSNLEGSLKDRSHSDHRSHSDHRLH 1640
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,257,788
Number of Sequences: 369166
Number of extensions: 1891386
Number of successful extensions: 5244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5173
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)