Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P12
(875 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8ZM94|RCNA_SALTY Nickel/cobalt efflux system rcnA 35 0.27
sp|P44243|YF23_HAEIN Hypothetical protein HI1523 32 3.0
sp|P07167|VIRAL_AGRTU Limited host range virA protein (LHR ... 30 6.7
sp|P28220|SORB_PIG Sorbin 30 6.7
sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding prot... 30 6.7
>sp|Q8ZM94|RCNA_SALTY Nickel/cobalt efflux system rcnA
Length = 288
Score = 35.0 bits (79), Expect = 0.27
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 573 NRHRDLDPDQDHRGTREVALEHTQDLDHIQDQDHNLHVLQEAVTN 707
N H D D D DH + H D DH D DH+ H+ E T+
Sbjct: 120 NHHHDHDHDHDHDHDHD----HDHDHDHDHDHDHHGHIHPEGATS 160
>sp|P44243|YF23_HAEIN Hypothetical protein HI1523
Length = 296
Score = 31.6 bits (70), Expect = 3.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Frame = +2
Query: 17 IANDFINVLHEKQNDEDFNDL-----------VPMNERLMDTDYRHMEINEMNDFRSFSD 163
I NDF + +D N L +P N RL + + IN++NDF+ + D
Sbjct: 81 IYNDFDGYAERLNHIDDINRLRQIIFNCLHGIIPKNGRL-SKEIKEEIINKINDFKGYKD 139
Query: 164 MNC 172
+NC
Sbjct: 140 LNC 142
>sp|P07167|VIRAL_AGRTU Limited host range virA protein (LHR virA)
Length = 835
Score = 30.4 bits (67), Expect = 6.7
Identities = 27/88 (30%), Positives = 40/88 (45%)
Frame = +3
Query: 609 RGTREVALEHTQDLDHIQDQDHNLHVLQEAVTNVLIKEVLLQGKVVLGRTVDLVVRPDLL 788
R E+AL+ TQ LD +Q + V I+EV+ G+V+LG V P L
Sbjct: 178 RPNTELALQITQSLDQLQ--------MSTNADKVAIQEVVRNGRVILG------VLPRL- 222
Query: 789 T*DLISKHLTISLVQINGVIDLIKYIFR 872
+ T+ LVQ +G + K + R
Sbjct: 223 -------NETVKLVQASGTFENTKKLQR 243
>sp|P28220|SORB_PIG Sorbin
Length = 153
Score = 30.4 bits (67), Expect = 6.7
Identities = 23/111 (20%), Positives = 37/111 (33%)
Frame = +2
Query: 146 FRSFSDMNCSNSDYSFHHTPSQYGLSPPHCSPRMSNQRSLLGSPWEEYRHPTFTXXXXXX 325
F+ ++ + D ++TP Y L SP+ HP
Sbjct: 21 FKQIHMVHKPDDDTKMYNTPYTYNAG-------------LYNSPYSAQSHPAAKTQTYRP 67
Query: 326 XXXXXXFSSNSRIVPSLLGVPPRHLPPKVTPLMSLDVSNNFKRHPNPRTKR 478
+ + VPP H+PP V PL D S+ K +P ++
Sbjct: 68 LSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDRDPPDRK 118
>sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1 (CHD-1)
Length = 1709
Score = 30.4 bits (67), Expect = 6.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 576 RHRDLDP--DQDHRGTREVALEHTQDLDHIQDQDHNLH 683
+HR LD +DHR E +L+ DH DH LH
Sbjct: 1603 KHRKLDDHRSRDHRSNLEGSLKDRSHSDHRSHSDHRLH 1640
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,257,788
Number of Sequences: 369166
Number of extensions: 1891386
Number of successful extensions: 5244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5173
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)