Planaria EST Database


DrC_02483

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02483
         (507 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12315|GLE1_YEAST  Nucleoporin GLE1 (Nuclear pore protein...    39   0.005
sp|P49463|DNAK_ODOSI  Chaperone protein dnaK (Heat shock pro...    31   1.5  
sp|Q33823|ATP6_ASTPE  ATP synthase a chain (ATPase protein 6)      31   1.9  
sp|Q55898|PPK_SYNY3  Polyphosphate kinase (Polyphosphoric ac...    29   7.2  
sp|Q89330|POLG_ZYMVR  Genome polyprotein [Contains: P1 prote...    28   9.4  
>sp|Q12315|GLE1_YEAST Nucleoporin GLE1 (Nuclear pore protein GLE1) (RNA export factor
           GLE1)
          Length = 538

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
 Frame = +2

Query: 107 GIGRLVAAISVALPPPGFIC---HPDLNPAFLWSLLARMCNRTPASLFTAQAYLGLLEIG 277
           GI  L A I+    P  FI    HP    A  W +LAR+CN TP +L T   ++ L    
Sbjct: 420 GILSLFAIITRLQLPQEFITTTSHP-FPIALSWHILARICN-TPLNLITNTHFVILGSWW 477

Query: 278 SSALLAY---YGNQFEKLLIAIQEKFT 349
            +A + +   YGNQ  KLLI I E+ T
Sbjct: 478 DAAAVQFLQAYGNQASKLLILIGEELT 504
>sp|P49463|DNAK_ODOSI Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
           protein) (HSP70)
          Length = 614

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 294 ASNALLPISNKPRYA*AVNNEAGVRLHILANKLHRNAGFKSG*QMNPGGGRATEIAATRR 115
           A N  +P+     ++ AV N+  V +H+L  +    AG KS      G  R   I A  R
Sbjct: 408 ARNTTIPVKKSEMFSTAVENQTNVEIHVLQGERELVAGNKS-----LGNFRLDGIPAAER 462

Query: 114 PIP 106
            +P
Sbjct: 463 GVP 465
>sp|Q33823|ATP6_ASTPE ATP synthase a chain (ATPase protein 6)
          Length = 230

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 348 VNFSWIAISNFSNWLP*YASNALL 277
           +N SW++ISN SNWLP  A+  +L
Sbjct: 29  LNLSWLSISNPSNWLPSRANLLIL 52
>sp|Q55898|PPK_SYNY3 Polyphosphate kinase (Polyphosphoric acid kinase)
           (ATP-polyphosphate phosphotransferase)
          Length = 728

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +2

Query: 137 VALPPPGFICHPDLNPAFLWS--LLARMCNRTPASLFTAQAY--LGLLEIGSSALLAYYG 304
           VALP    +C PD N  +LW+   L ++     ASLF         L  +  +A +A   
Sbjct: 198 VALPED--VCQPDPNKPWLWTGVPLEQVIAHNLASLFPGMIIQECHLFRVTRNADIAVEE 255

Query: 305 NQFEKLLIAIQEK 343
           ++ + LL+AI+E+
Sbjct: 256 DEADDLLLAIEEE 268
>sp|Q89330|POLG_ZYMVR Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
            Helper component proteinase (HC-pro); Protein P3; 6 kDa
            protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
            kDa protein 2 (6K2); Viral genome-linked protein (VPg);
            Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
            kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
            (NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
            (CP)]
          Length = 3083

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 25/85 (29%), Positives = 39/85 (45%)
 Frame = +2

Query: 131  ISVALPPPGFICHPDLNPAFLWSLLARMCNRTPASLFTAQAYLGLLEIGSSALLAYYGNQ 310
            I V+  PPG  C  D +  F   +      +T   L + QA++G    GS+A +  +GN 
Sbjct: 1367 IKVSATPPGREC--DFDTQFAVKV------KTEDHL-SFQAFVGAQRTGSNADMIQHGNN 1417

Query: 311  FEKLLIAIQEKFTVPKSLTERSLSL 385
                + +  E   + K LTER  S+
Sbjct: 1418 ILVYVASYNEVDMLSKLLTERQFSV 1442
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,657,841
Number of Sequences: 369166
Number of extensions: 923480
Number of successful extensions: 2164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2163
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)