Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P10
(507 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12315|GLE1_YEAST Nucleoporin GLE1 (Nuclear pore protein... 39 0.005
sp|P49463|DNAK_ODOSI Chaperone protein dnaK (Heat shock pro... 31 1.5
sp|Q33823|ATP6_ASTPE ATP synthase a chain (ATPase protein 6) 31 1.9
sp|Q55898|PPK_SYNY3 Polyphosphate kinase (Polyphosphoric ac... 29 7.2
sp|Q89330|POLG_ZYMVR Genome polyprotein [Contains: P1 prote... 28 9.4
>sp|Q12315|GLE1_YEAST Nucleoporin GLE1 (Nuclear pore protein GLE1) (RNA export factor
GLE1)
Length = 538
Score = 39.3 bits (90), Expect = 0.005
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +2
Query: 107 GIGRLVAAISVALPPPGFIC---HPDLNPAFLWSLLARMCNRTPASLFTAQAYLGLLEIG 277
GI L A I+ P FI HP A W +LAR+CN TP +L T ++ L
Sbjct: 420 GILSLFAIITRLQLPQEFITTTSHP-FPIALSWHILARICN-TPLNLITNTHFVILGSWW 477
Query: 278 SSALLAY---YGNQFEKLLIAIQEKFT 349
+A + + YGNQ KLLI I E+ T
Sbjct: 478 DAAAVQFLQAYGNQASKLLILIGEELT 504
>sp|P49463|DNAK_ODOSI Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
Length = 614
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 294 ASNALLPISNKPRYA*AVNNEAGVRLHILANKLHRNAGFKSG*QMNPGGGRATEIAATRR 115
A N +P+ ++ AV N+ V +H+L + AG KS G R I A R
Sbjct: 408 ARNTTIPVKKSEMFSTAVENQTNVEIHVLQGERELVAGNKS-----LGNFRLDGIPAAER 462
Query: 114 PIP 106
+P
Sbjct: 463 GVP 465
>sp|Q33823|ATP6_ASTPE ATP synthase a chain (ATPase protein 6)
Length = 230
Score = 30.8 bits (68), Expect = 1.9
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -1
Query: 348 VNFSWIAISNFSNWLP*YASNALL 277
+N SW++ISN SNWLP A+ +L
Sbjct: 29 LNLSWLSISNPSNWLPSRANLLIL 52
>sp|Q55898|PPK_SYNY3 Polyphosphate kinase (Polyphosphoric acid kinase)
(ATP-polyphosphate phosphotransferase)
Length = 728
Score = 28.9 bits (63), Expect = 7.2
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 137 VALPPPGFICHPDLNPAFLWS--LLARMCNRTPASLFTAQAY--LGLLEIGSSALLAYYG 304
VALP +C PD N +LW+ L ++ ASLF L + +A +A
Sbjct: 198 VALPED--VCQPDPNKPWLWTGVPLEQVIAHNLASLFPGMIIQECHLFRVTRNADIAVEE 255
Query: 305 NQFEKLLIAIQEK 343
++ + LL+AI+E+
Sbjct: 256 DEADDLLLAIEEE 268
>sp|Q89330|POLG_ZYMVR Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3083
Score = 28.5 bits (62), Expect = 9.4
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +2
Query: 131 ISVALPPPGFICHPDLNPAFLWSLLARMCNRTPASLFTAQAYLGLLEIGSSALLAYYGNQ 310
I V+ PPG C D + F + +T L + QA++G GS+A + +GN
Sbjct: 1367 IKVSATPPGREC--DFDTQFAVKV------KTEDHL-SFQAFVGAQRTGSNADMIQHGNN 1417
Query: 311 FEKLLIAIQEKFTVPKSLTERSLSL 385
+ + E + K LTER S+
Sbjct: 1418 ILVYVASYNEVDMLSKLLTERQFSV 1442
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,657,841
Number of Sequences: 369166
Number of extensions: 923480
Number of successful extensions: 2164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2163
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)