Planaria EST Database


DrC_02480

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02480
         (831 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y3C5|RNF11_HUMAN  RING finger protein 11 (Sid 1669)           52   2e-06
sp|Q9QYK7|RNF11_MOUSE  RING finger protein 11 (NEDD4 WW doma...    52   2e-06
sp|Q9SL78|ATL2D_ARATH  Putative RING-H2 finger protein ATL2D...    38   0.030
sp|Q9FLC6|ATL5B_ARATH  Putative RING-H2 finger protein ATL5B...    38   0.039
sp|P0C034|ATL1K_ARATH  Putative RING-H2 finger protein ATL1K...    36   0.11 
sp|Q94BY6|ATL1I_ARATH  RING-H2 finger protein ATL1I                36   0.11 
sp|Q9FIR0|ATL5L_ARATH  Putative RING-H2 finger protein ATL5L       36   0.15 
sp|Q6NML0|ATL1J_ARATH  RING-H2 finger protein ATL1J                36   0.15 
sp|Q9SG96|ATL3C_ARATH  RING-H2 finger protein ATL3C                35   0.19 
sp|Q5XF85|ATL4J_ARATH  RING-H2 finger protein ATL4J precursor      35   0.33 
>sp|Q9Y3C5|RNF11_HUMAN RING finger protein 11 (Sid 1669)
          Length = 154

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +3

Query: 15  FHRKCIDEWLLRSFTCPSCLEQVDMVLLSN 104
           +H  CID+WL+RSFTCPSC+E VD  LLS+
Sbjct: 121 YHLDCIDDWLMRSFTCPSCMEPVDAALLSS 150
>sp|Q9QYK7|RNF11_MOUSE RING finger protein 11 (NEDD4 WW domain-binding protein 2) (Sid
           1669)
          Length = 154

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +3

Query: 15  FHRKCIDEWLLRSFTCPSCLEQVDMVLLSN 104
           +H  CID+WL+RSFTCPSC+E VD  LLS+
Sbjct: 121 YHLDCIDDWLMRSFTCPSCMEPVDAALLSS 150
>sp|Q9SL78|ATL2D_ARATH Putative RING-H2 finger protein ATL2D precursor (RING-H2 finger
           protein ATL12)
          Length = 390

 Score = 38.1 bits (87), Expect = 0.030
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 15  FHRKCIDEWLLRSFTCPSCLEQV----DMVLLSNQTVKTKPLNQ 134
           FH  CID+WL +  TCP C  +V    D+ +L N +   + LNQ
Sbjct: 147 FHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQ 190
>sp|Q9FLC6|ATL5B_ARATH Putative RING-H2 finger protein ATL5B precursor
          Length = 176

 Score = 37.7 bits (86), Expect = 0.039
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +3

Query: 12  GFHRKCIDEWLLRSFTCPSCLEQVDMVLLSNQT 110
           GFH KCID WLL   +CP+C +     LL +QT
Sbjct: 135 GFHVKCIDTWLLSHSSCPTCRQS----LLEHQT 163
>sp|P0C034|ATL1K_ARATH Putative RING-H2 finger protein ATL1K (RING-H2 finger protein
           ATL10)
          Length = 251

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 12  GFHRKCIDEWLLRSFTCPSC 71
           GFH +CID+WL +  TCP C
Sbjct: 157 GFHVRCIDKWLQQHLTCPKC 176
>sp|Q94BY6|ATL1I_ARATH RING-H2 finger protein ATL1I
          Length = 226

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 12  GFHRKCIDEWLLRSFTCPSC 71
           GFH +CID+WL +  TCP C
Sbjct: 158 GFHVRCIDKWLQQHLTCPKC 177
>sp|Q9FIR0|ATL5L_ARATH Putative RING-H2 finger protein ATL5L
          Length = 289

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 15  FHRKCIDEWLLRSFTCPSCLEQVDMVLLSNQTVKTKPLNQESGDVGKKRKRRSASS 182
           FH++CID+WL  + TCP C   +D     N       + QE+    + +++ S S+
Sbjct: 138 FHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHENRDQEQTSTSN 193
>sp|Q6NML0|ATL1J_ARATH RING-H2 finger protein ATL1J
          Length = 225

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 12  GFHRKCIDEWLLRSFTCPSC 71
           GFH +CID+WL    TCP C
Sbjct: 157 GFHVRCIDKWLQHHLTCPKC 176
>sp|Q9SG96|ATL3C_ARATH RING-H2 finger protein ATL3C
          Length = 181

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 12  GFHRKCIDEWLLRSFTCPSCLEQV 83
           GFH +CID WLL   +CP+C + +
Sbjct: 136 GFHVRCIDTWLLSRSSCPTCRQSL 159
>sp|Q5XF85|ATL4J_ARATH RING-H2 finger protein ATL4J precursor
          Length = 432

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 15  FHRKCIDEWLLRSFTCPSCLEQVDM 89
           FH  CID+WL +  TCP C ++V M
Sbjct: 146 FHIGCIDQWLEQHATCPLCRDRVSM 170
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,768,985
Number of Sequences: 369166
Number of extensions: 1517571
Number of successful extensions: 3266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3266
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)