Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_O21
(831 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3C5|RNF11_HUMAN RING finger protein 11 (Sid 1669) 52 2e-06
sp|Q9QYK7|RNF11_MOUSE RING finger protein 11 (NEDD4 WW doma... 52 2e-06
sp|Q9SL78|ATL2D_ARATH Putative RING-H2 finger protein ATL2D... 38 0.030
sp|Q9FLC6|ATL5B_ARATH Putative RING-H2 finger protein ATL5B... 38 0.039
sp|P0C034|ATL1K_ARATH Putative RING-H2 finger protein ATL1K... 36 0.11
sp|Q94BY6|ATL1I_ARATH RING-H2 finger protein ATL1I 36 0.11
sp|Q9FIR0|ATL5L_ARATH Putative RING-H2 finger protein ATL5L 36 0.15
sp|Q6NML0|ATL1J_ARATH RING-H2 finger protein ATL1J 36 0.15
sp|Q9SG96|ATL3C_ARATH RING-H2 finger protein ATL3C 35 0.19
sp|Q5XF85|ATL4J_ARATH RING-H2 finger protein ATL4J precursor 35 0.33
>sp|Q9Y3C5|RNF11_HUMAN RING finger protein 11 (Sid 1669)
Length = 154
Score = 52.0 bits (123), Expect = 2e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +3
Query: 15 FHRKCIDEWLLRSFTCPSCLEQVDMVLLSN 104
+H CID+WL+RSFTCPSC+E VD LLS+
Sbjct: 121 YHLDCIDDWLMRSFTCPSCMEPVDAALLSS 150
>sp|Q9QYK7|RNF11_MOUSE RING finger protein 11 (NEDD4 WW domain-binding protein 2) (Sid
1669)
Length = 154
Score = 52.0 bits (123), Expect = 2e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +3
Query: 15 FHRKCIDEWLLRSFTCPSCLEQVDMVLLSN 104
+H CID+WL+RSFTCPSC+E VD LLS+
Sbjct: 121 YHLDCIDDWLMRSFTCPSCMEPVDAALLSS 150
>sp|Q9SL78|ATL2D_ARATH Putative RING-H2 finger protein ATL2D precursor (RING-H2 finger
protein ATL12)
Length = 390
Score = 38.1 bits (87), Expect = 0.030
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +3
Query: 15 FHRKCIDEWLLRSFTCPSCLEQV----DMVLLSNQTVKTKPLNQ 134
FH CID+WL + TCP C +V D+ +L N + + LNQ
Sbjct: 147 FHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQ 190
>sp|Q9FLC6|ATL5B_ARATH Putative RING-H2 finger protein ATL5B precursor
Length = 176
Score = 37.7 bits (86), Expect = 0.039
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 12 GFHRKCIDEWLLRSFTCPSCLEQVDMVLLSNQT 110
GFH KCID WLL +CP+C + LL +QT
Sbjct: 135 GFHVKCIDTWLLSHSSCPTCRQS----LLEHQT 163
>sp|P0C034|ATL1K_ARATH Putative RING-H2 finger protein ATL1K (RING-H2 finger protein
ATL10)
Length = 251
Score = 36.2 bits (82), Expect = 0.11
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 12 GFHRKCIDEWLLRSFTCPSC 71
GFH +CID+WL + TCP C
Sbjct: 157 GFHVRCIDKWLQQHLTCPKC 176
>sp|Q94BY6|ATL1I_ARATH RING-H2 finger protein ATL1I
Length = 226
Score = 36.2 bits (82), Expect = 0.11
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 12 GFHRKCIDEWLLRSFTCPSC 71
GFH +CID+WL + TCP C
Sbjct: 158 GFHVRCIDKWLQQHLTCPKC 177
>sp|Q9FIR0|ATL5L_ARATH Putative RING-H2 finger protein ATL5L
Length = 289
Score = 35.8 bits (81), Expect = 0.15
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 15 FHRKCIDEWLLRSFTCPSCLEQVDMVLLSNQTVKTKPLNQESGDVGKKRKRRSASS 182
FH++CID+WL + TCP C +D N + QE+ + +++ S S+
Sbjct: 138 FHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHENRDQEQTSTSN 193
>sp|Q6NML0|ATL1J_ARATH RING-H2 finger protein ATL1J
Length = 225
Score = 35.8 bits (81), Expect = 0.15
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 12 GFHRKCIDEWLLRSFTCPSC 71
GFH +CID+WL TCP C
Sbjct: 157 GFHVRCIDKWLQHHLTCPKC 176
>sp|Q9SG96|ATL3C_ARATH RING-H2 finger protein ATL3C
Length = 181
Score = 35.4 bits (80), Expect = 0.19
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 12 GFHRKCIDEWLLRSFTCPSCLEQV 83
GFH +CID WLL +CP+C + +
Sbjct: 136 GFHVRCIDTWLLSRSSCPTCRQSL 159
>sp|Q5XF85|ATL4J_ARATH RING-H2 finger protein ATL4J precursor
Length = 432
Score = 34.7 bits (78), Expect = 0.33
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 15 FHRKCIDEWLLRSFTCPSCLEQVDM 89
FH CID+WL + TCP C ++V M
Sbjct: 146 FHIGCIDQWLEQHATCPLCRDRVSM 170
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,768,985
Number of Sequences: 369166
Number of extensions: 1517571
Number of successful extensions: 3266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3266
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)