Planaria EST Database


DrC_02471

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02471
         (882 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34257|TC3A_CAEEL  Transposable element Tc3 transposase         39   0.015
sp|Q8V5E0|POL1_BRAV  RNA1 polyprotein (P1) [Contains: X1 pro...    34   0.47 
sp|O08762|NETR_MOUSE  Neurotrypsin precursor (Motopsin) (Bra...    33   1.1  
sp|Q9BMN8|LAR_CAEEL  Tyrosine-protein phosphatase Lar-like p...    30   6.8  
sp|P31225|CBP1_CANAL  Corticosteroid-binding protein               30   8.9  
sp|Q9ZCP8|EX7L_RICPR  Probable exodeoxyribonuclease VII larg...    30   8.9  
sp|Q92GU6|EX7L_RICCN  Probable exodeoxyribonuclease VII larg...    30   8.9  
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
          Length = 329

 Score = 39.3 bits (90), Expect = 0.015
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = +2

Query: 590 KHHIHDDFVFWPDLASAHYANSTLQLLQSLNISFVPKSCNPPNIPHCRPIENFWGRLKAR 769
           +H+   DF F  D A+ H +NST    +   I+ +     P   P   PIEN WG L   
Sbjct: 219 RHYSRKDFRFQQDNATIHVSNSTRDYFKLKKINLLDW---PARSPDLNPIENLWGILVRI 275

Query: 770 VYMGGWEARNILQLQRKIKKSLKEMNVSEL 859
           VY        +  L++ I  + K +  ++L
Sbjct: 276 VYAQNKTYPTVASLKQGILDAWKSIPDNQL 305
>sp|Q8V5E0|POL1_BRAV RNA1 polyprotein (P1) [Contains: X1 protein; X2 protein; Putative
            helicase (NTP-binding protein) (NTB) (Membrane-binding
            protein); Viral genome-linked protein (VPg); Picornain
            3C-like protease (3C-like protease) (PRO); RNA-directed
            RNA polymerase (POL)]
          Length = 2094

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 387  HFFTSNFNATPYSVKYKTEKKFPVQLMVWICISEDAISDPIFFKDRTASL 536
            H + SN++   Y++    E K+ + L+VW+ I  D+I   I FK R+  L
Sbjct: 1124 HRWRSNYSERSYALNSNLEDKYLLDLLVWLQIPGDSIISCIRFKGRSLLL 1173
>sp|O08762|NETR_MOUSE Neurotrypsin precursor (Motopsin) (Brain-specific serine protease
           3) (BSSP-3)
          Length = 761

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
 Frame = +3

Query: 78  GHNKK------LTNAQ*GSICR--WIANKKGVSLRQKAKKYDVSEKTMRNIVRERG---- 221
           G NKK        N Q G+IC   W      V  RQ   K     +TM      +G    
Sbjct: 391 GENKKEGRVEVFVNGQWGTICDDGWTDKHAAVICRQLGYKGPARARTMAYFGEGKGPIHM 450

Query: 222 --LQCRKQTKAPQYTVEQE-----CRAKLRAGILCDVLREK 323
             ++C    KA    V+Q+     CR    AG++CD L +K
Sbjct: 451 DNVKCTGNEKALADCVKQDIGRHNCRHSEDAGVICDYLEKK 491
>sp|Q9BMN8|LAR_CAEEL Tyrosine-protein phosphatase Lar-like precursor (Protein-tyrosine
            phosphate 3)
          Length = 2200

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 575  VRFIEKHHIHDDFVFWPDLASAHYANSTLQLLQSLNISFVPKSCNPPNIPHC 730
            VR + + H    F+ WPD+   H A+  L  +  ++ ++    C  P   HC
Sbjct: 2086 VRTVRQFH----FMEWPDVGKPHTADHFLDFVTQVHNTYAQFGCTGPITVHC 2133
>sp|P31225|CBP1_CANAL Corticosteroid-binding protein
          Length = 489

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
 Frame = +3

Query: 81  HNKKLTNAQ*---GSICRWIANKKGVSLRQKAKKYDVSEKTMRNIVRERGLQCRKQTKAP 251
           +N+ +T  Q    G + R++    G+S  + + KY V+    RN++ ++G          
Sbjct: 154 YNRLITEEQREYCGRMMRYLEFWFGISWDRISGKYAVTTHQGRNLLNKKGY--------- 204

Query: 252 QYTVEQECRAKLRAGILCD-----VLRE-----KKILMDDDSYFKLKCDYLPGN-DHFFT 398
            Y VE   +    + +L +     ++R      K++L++  +  ++ CDYL         
Sbjct: 205 GYLVESLAKRIPESSLLLEEPVNKIIRNNKDAGKRVLVETINGLQIFCDYLIVTVPQSIL 264

Query: 399 SNFNATPYSVKYKTEKKFPVQLMVWI-CISEDAISDPIFFKDR 524
           S   ++PYS+K+  E K P +L+  I  I   A+   IF  DR
Sbjct: 265 SLEESSPYSIKW--EPKLPQRLVESINSIHFGALGKVIFEFDR 305
>sp|Q9ZCP8|EX7L_RICPR Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
           large subunit)
          Length = 453

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 294 GILCDVLREKKILMDDDSYFKLK---CDYLPGNDHFFTSNFNATPYSVKYKTEKKFPVQL 464
           G +  +L E+K  ++ +  F  K     +LP      TS   A    + ++  ++FP ++
Sbjct: 112 GAMLQILNERKTRLEKEGLFNKKRIPIPFLPDKIGVITSITGAVIKDIIHRIRERFPTRI 171

Query: 465 MVW 473
           ++W
Sbjct: 172 IIW 174
>sp|Q92GU6|EX7L_RICCN Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
           large subunit)
          Length = 444

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 294 GILCDVLREKKILMDDDSYF---KLKCDYLPGNDHFFTSNFNATPYSVKYKTEKKFPVQL 464
           G +  +L E+K  ++ +  F   ++   +LP      TS   A    + ++  ++FP ++
Sbjct: 112 GAMLQILNERKAKLEKEGLFNKIRIPIPFLPDKIGVITSITGAVIKDIIHRIRERFPTRI 171

Query: 465 MVW 473
           ++W
Sbjct: 172 IIW 174
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,569,396
Number of Sequences: 369166
Number of extensions: 2106751
Number of successful extensions: 4959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4957
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)