Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_M12
(882 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase 39 0.015
sp|Q8V5E0|POL1_BRAV RNA1 polyprotein (P1) [Contains: X1 pro... 34 0.47
sp|O08762|NETR_MOUSE Neurotrypsin precursor (Motopsin) (Bra... 33 1.1
sp|Q9BMN8|LAR_CAEEL Tyrosine-protein phosphatase Lar-like p... 30 6.8
sp|P31225|CBP1_CANAL Corticosteroid-binding protein 30 8.9
sp|Q9ZCP8|EX7L_RICPR Probable exodeoxyribonuclease VII larg... 30 8.9
sp|Q92GU6|EX7L_RICCN Probable exodeoxyribonuclease VII larg... 30 8.9
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
Length = 329
Score = 39.3 bits (90), Expect = 0.015
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = +2
Query: 590 KHHIHDDFVFWPDLASAHYANSTLQLLQSLNISFVPKSCNPPNIPHCRPIENFWGRLKAR 769
+H+ DF F D A+ H +NST + I+ + P P PIEN WG L
Sbjct: 219 RHYSRKDFRFQQDNATIHVSNSTRDYFKLKKINLLDW---PARSPDLNPIENLWGILVRI 275
Query: 770 VYMGGWEARNILQLQRKIKKSLKEMNVSEL 859
VY + L++ I + K + ++L
Sbjct: 276 VYAQNKTYPTVASLKQGILDAWKSIPDNQL 305
>sp|Q8V5E0|POL1_BRAV RNA1 polyprotein (P1) [Contains: X1 protein; X2 protein; Putative
helicase (NTP-binding protein) (NTB) (Membrane-binding
protein); Viral genome-linked protein (VPg); Picornain
3C-like protease (3C-like protease) (PRO); RNA-directed
RNA polymerase (POL)]
Length = 2094
Score = 34.3 bits (77), Expect = 0.47
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 387 HFFTSNFNATPYSVKYKTEKKFPVQLMVWICISEDAISDPIFFKDRTASL 536
H + SN++ Y++ E K+ + L+VW+ I D+I I FK R+ L
Sbjct: 1124 HRWRSNYSERSYALNSNLEDKYLLDLLVWLQIPGDSIISCIRFKGRSLLL 1173
>sp|O08762|NETR_MOUSE Neurotrypsin precursor (Motopsin) (Brain-specific serine protease
3) (BSSP-3)
Length = 761
Score = 33.1 bits (74), Expect = 1.1
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Frame = +3
Query: 78 GHNKK------LTNAQ*GSICR--WIANKKGVSLRQKAKKYDVSEKTMRNIVRERG---- 221
G NKK N Q G+IC W V RQ K +TM +G
Sbjct: 391 GENKKEGRVEVFVNGQWGTICDDGWTDKHAAVICRQLGYKGPARARTMAYFGEGKGPIHM 450
Query: 222 --LQCRKQTKAPQYTVEQE-----CRAKLRAGILCDVLREK 323
++C KA V+Q+ CR AG++CD L +K
Sbjct: 451 DNVKCTGNEKALADCVKQDIGRHNCRHSEDAGVICDYLEKK 491
>sp|Q9BMN8|LAR_CAEEL Tyrosine-protein phosphatase Lar-like precursor (Protein-tyrosine
phosphate 3)
Length = 2200
Score = 30.4 bits (67), Expect = 6.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 575 VRFIEKHHIHDDFVFWPDLASAHYANSTLQLLQSLNISFVPKSCNPPNIPHC 730
VR + + H F+ WPD+ H A+ L + ++ ++ C P HC
Sbjct: 2086 VRTVRQFH----FMEWPDVGKPHTADHFLDFVTQVHNTYAQFGCTGPITVHC 2133
>sp|P31225|CBP1_CANAL Corticosteroid-binding protein
Length = 489
Score = 30.0 bits (66), Expect = 8.9
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Frame = +3
Query: 81 HNKKLTNAQ*---GSICRWIANKKGVSLRQKAKKYDVSEKTMRNIVRERGLQCRKQTKAP 251
+N+ +T Q G + R++ G+S + + KY V+ RN++ ++G
Sbjct: 154 YNRLITEEQREYCGRMMRYLEFWFGISWDRISGKYAVTTHQGRNLLNKKGY--------- 204
Query: 252 QYTVEQECRAKLRAGILCD-----VLRE-----KKILMDDDSYFKLKCDYLPGN-DHFFT 398
Y VE + + +L + ++R K++L++ + ++ CDYL
Sbjct: 205 GYLVESLAKRIPESSLLLEEPVNKIIRNNKDAGKRVLVETINGLQIFCDYLIVTVPQSIL 264
Query: 399 SNFNATPYSVKYKTEKKFPVQLMVWI-CISEDAISDPIFFKDR 524
S ++PYS+K+ E K P +L+ I I A+ IF DR
Sbjct: 265 SLEESSPYSIKW--EPKLPQRLVESINSIHFGALGKVIFEFDR 305
>sp|Q9ZCP8|EX7L_RICPR Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
large subunit)
Length = 453
Score = 30.0 bits (66), Expect = 8.9
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 GILCDVLREKKILMDDDSYFKLK---CDYLPGNDHFFTSNFNATPYSVKYKTEKKFPVQL 464
G + +L E+K ++ + F K +LP TS A + ++ ++FP ++
Sbjct: 112 GAMLQILNERKTRLEKEGLFNKKRIPIPFLPDKIGVITSITGAVIKDIIHRIRERFPTRI 171
Query: 465 MVW 473
++W
Sbjct: 172 IIW 174
>sp|Q92GU6|EX7L_RICCN Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
large subunit)
Length = 444
Score = 30.0 bits (66), Expect = 8.9
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 GILCDVLREKKILMDDDSYF---KLKCDYLPGNDHFFTSNFNATPYSVKYKTEKKFPVQL 464
G + +L E+K ++ + F ++ +LP TS A + ++ ++FP ++
Sbjct: 112 GAMLQILNERKAKLEKEGLFNKIRIPIPFLPDKIGVITSITGAVIKDIIHRIRERFPTRI 171
Query: 465 MVW 473
++W
Sbjct: 172 IIW 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,569,396
Number of Sequences: 369166
Number of extensions: 2106751
Number of successful extensions: 4959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4957
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)