Planaria EST Database


DrC_02460

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02460
         (822 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JHW0|PSB7_RAT  Proteasome subunit beta type 7 precursor...   274   2e-73
sp|Q99436|PSB7_HUMAN  Proteasome subunit beta type 7 precurs...   272   9e-73
sp|P70195|PSB7_MOUSE  Proteasome subunit beta type 7 precurs...   270   4e-72
sp|Q09841|PSB7_SCHPO  Probable proteasome subunit beta type ...   250   3e-66
sp|Q7DLS1|PSB7B_ARATH  Proteasome subunit beta type 7-B prec...   244   2e-64
sp|O23710|PSB7A_ARATH  Proteasome subunit beta type 7-A prec...   243   5e-64
sp|P40306|PSB10_HUMAN  Proteasome subunit beta type 10 precu...   239   9e-63
sp|O35955|PSBA_MOUSE  Proteasome subunit beta type 10 precur...   239   9e-63
sp|P25043|PSB7_YEAST  Proteasome component PUP1 precursor (M...   229   9e-60
sp|P93395|PSB6_TOBAC  Proteasome subunit beta type 6 precurs...   110   4e-24
>sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type 7 precursor (Proteasome subunit Z)
           (Macropain chain Z) (Multicatalytic endopeptidase
           complex chain Z)
          Length = 277

 Score =  274 bits (700), Expect = 2e-73
 Identities = 133/232 (57%), Positives = 172/232 (74%)
 Frame = +3

Query: 39  RMRKTGTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADTEF 218
           + RKTGTTI GV+Y +G+VLGADTRATEG +VA+KNC KIH+IS NIYCCGAGTAADT+ 
Sbjct: 38  KARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDM 97

Query: 219 VTRNISSKIRIHHKLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVDFEGAKLVS 398
            T+ ISS + +H       R PRVV A  MLKQ LFRYQG++GAAL+LGGVD  G  L S
Sbjct: 98  TTQLISSNLELHSLTTG--RLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYS 155

Query: 399 IHPHGSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSGSN 578
           I+PHGS+D +PY  MGSGSLAA++  E  + PD+ +EEA +LV  AI  GI +D+GSGSN
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215

Query: 579 VDLCIITKDGAENIRTYEEAHKKGVRFNKYQFPEGTTPLLKSIVRPVEMEIV 734
           +DLC+I+K   + +R Y   +KKG RF +Y+  +GTT +L   V P+E+E++
Sbjct: 216 IDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTPLELEVL 267
>sp|Q99436|PSB7_HUMAN Proteasome subunit beta type 7 precursor (Proteasome subunit Z)
           (Macropain chain Z) (Multicatalytic endopeptidase
           complex chain Z)
          Length = 277

 Score =  272 bits (695), Expect = 9e-73
 Identities = 131/236 (55%), Positives = 173/236 (73%)
 Frame = +3

Query: 39  RMRKTGTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADTEF 218
           ++RKTGTTI GV+Y +G+VLGADTRATEG +VA+KNC KIH+IS NIYCCGAGTAADT+ 
Sbjct: 38  KVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDM 97

Query: 219 VTRNISSKIRIHHKLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVDFEGAKLVS 398
            T+ ISS + +H       R PRVV A  MLKQ LFRYQG++GAAL+LGGVD  G  L S
Sbjct: 98  TTQLISSNLELHSL--STGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYS 155

Query: 399 IHPHGSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSGSN 578
           I+PHGS+D +PY  MGSGSLAA++  E  + PD+ +EEA  LV  AI  GI +D+GSGSN
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSN 215

Query: 579 VDLCIITKDGAENIRTYEEAHKKGVRFNKYQFPEGTTPLLKSIVRPVEMEIVSTRI 746
           +DLC+I+K+  + +R Y   +KKG R  +Y+  +GTT +L   + P+E+E++   +
Sbjct: 216 IDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLEIEVLEETV 271
>sp|P70195|PSB7_MOUSE Proteasome subunit beta type 7 precursor (Proteasome subunit Z)
           (Macropain chain Z) (Multicatalytic endopeptidase
           complex chain Z)
          Length = 277

 Score =  270 bits (690), Expect = 4e-72
 Identities = 131/236 (55%), Positives = 172/236 (72%)
 Frame = +3

Query: 39  RMRKTGTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADTEF 218
           + RKTGTTI GV+Y +G+VLGADTRATEG +VA+KNC KIH+IS NIYCCGAGTAADT+ 
Sbjct: 38  KARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDM 97

Query: 219 VTRNISSKIRIHHKLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVDFEGAKLVS 398
            T+ ISS + +H       R PRVV A  MLKQ LFRYQG++GAAL+LGGVD  G  L S
Sbjct: 98  TTQLISSNLELHSLTTG--RLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYS 155

Query: 399 IHPHGSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSGSN 578
           I+PHGS+D +PY  MGSGSLAA++  E  + PD+ +EEA +LV  AI  GI +D+GSGSN
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215

Query: 579 VDLCIITKDGAENIRTYEEAHKKGVRFNKYQFPEGTTPLLKSIVRPVEMEIVSTRI 746
           +DLC+I+K   + +R +   +KKG R  +Y+  +GTT +L   V P+E+E++   +
Sbjct: 216 IDLCVISKSKLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPLEIEVLEETV 271
>sp|Q09841|PSB7_SCHPO Probable proteasome subunit beta type 7 precursor
          Length = 267

 Score =  250 bits (639), Expect = 3e-66
 Identities = 132/249 (53%), Positives = 173/249 (69%)
 Frame = +3

Query: 33  TSRMRKTGTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADT 212
           T +   TGTTIVGVI  + +VLGADTRAT G I+A+KNC+K+H IS NI+C GAGTAADT
Sbjct: 28  TPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADT 87

Query: 213 EFVTRNISSKIRIHHKLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVDFEGAKL 392
           EFVT  ISS I +H    +  RKPRVV A  MLKQ+LFRYQGH+GA L+LGG D +G  L
Sbjct: 88  EFVTSMISSNIELHSLYTN--RKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHL 145

Query: 393 VSIHPHGSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSG 572
            +I  HGSSD +PY A+GSGSLAAIS LE+ Y PDL + EAMELV+ AI  GI +D+GSG
Sbjct: 146 FTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSG 205

Query: 573 SNVDLCIITKDGAENIRTYEEAHKKGVRFNKYQFPEGTTPLLKSIVRPVEMEIVSTRIIR 752
           SN DL +I ++ A   R Y + +++  + +KY +  GTT +LK        +I     ++
Sbjct: 206 SNCDLVVIDEEKATPYRGYSKPNERATKQSKYTYDRGTTAVLKE-------DIYKFVTVQ 258

Query: 753 DLPQEEMEI 779
           DL + ++++
Sbjct: 259 DLDEMQVDV 267
>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type 7-B precursor (Proteasome subunit beta
           type 2) (20S proteasome beta subunit B-2) (Proteasome
           component FC)
          Length = 274

 Score =  244 bits (624), Expect = 2e-64
 Identities = 130/231 (56%), Positives = 168/231 (72%), Gaps = 2/231 (0%)
 Frame = +3

Query: 48  KTGTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADTEFVTR 227
           KTGTTIVG+I+ +GV+LGADTRATEG IVA+KNC+KIHY++ NIYCCGAGTAADTE VT 
Sbjct: 37  KTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD 96

Query: 228 NISSKIRIHHKLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVDFEGAKLVSIHP 407
            +SS++R+H       R  RVV A  +LK++LF YQGHV AAL+LGGVD  G  L +I+P
Sbjct: 97  MVSSQLRLHRY--QTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYP 154

Query: 408 HGSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSGSNVDL 587
           HGS+D +P+A MGSGSLAA+S  E+ Y   LT++E ++LV  AI  GI +D+GSGSNVD+
Sbjct: 155 HGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDI 214

Query: 588 CIITKDGAENIRTYEEAHKKGVRFNK-YQFPEGTTPLLKSIVRPVE-MEIV 734
           C+ITK   E +R Y E + +    +K Y F + T  LL  I   +E +EIV
Sbjct: 215 CVITKGHKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLERVEIV 265
>sp|O23710|PSB7A_ARATH Proteasome subunit beta type 7-A precursor (Proteasome subunit beta
           type 2) (20S proteasome beta subunit B-1) (Proteasome
           component FA) (Proteasome component FB)
          Length = 273

 Score =  243 bits (620), Expect = 5e-64
 Identities = 125/226 (55%), Positives = 164/226 (72%), Gaps = 1/226 (0%)
 Frame = +3

Query: 48  KTGTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADTEFVTR 227
           KTGTTIVG+I+ +GV+LGADTRATEG IVA+KNC+KIHY++ NIYCCGAGTAADTE VT 
Sbjct: 37  KTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD 96

Query: 228 NISSKIRIHHKLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVDFEGAKLVSIHP 407
            +SS++R+H       R  RV+ A  +LK++LF YQGHV AAL+LGGVD  G  L +I+P
Sbjct: 97  MVSSQLRLHRY--QTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYP 154

Query: 408 HGSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSGSNVDL 587
           HGS+D +P+A MGSGSLAA+S  E+ Y   LT++E ++LV  +I  GI +D+GSGSNVD+
Sbjct: 155 HGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDI 214

Query: 588 CIITKDGAENIRTYEEAHKKGVRFNK-YQFPEGTTPLLKSIVRPVE 722
           C+ITK   E +R Y E + +    +K Y F + T  LL  I   +E
Sbjct: 215 CVITKGNKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLE 260
>sp|P40306|PSB10_HUMAN Proteasome subunit beta type 10 precursor (Proteasome MECl-1)
           (Macropain subunit MECl-1) (Multicatalytic endopeptidase
           complex subunit MECl-1)
          Length = 273

 Score =  239 bits (609), Expect = 9e-63
 Identities = 115/234 (49%), Positives = 160/234 (68%)
 Frame = +3

Query: 45  RKTGTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADTEFVT 224
           RKTGTTI G+++ +GV+LGADTRAT  ++VA+K+C+KIH+I+  IYCCGAG AAD E  T
Sbjct: 36  RKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 95

Query: 225 RNISSKIRIHHKLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVDFEGAKLVSIH 404
           R ++SK+ +H       R+PRV   T +L+Q LFRYQGHVGA+LI+GGVD  G +L  +H
Sbjct: 96  RMVASKMELHAL--STGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVH 153

Query: 405 PHGSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSGSNVD 584
           PHGS   +P+ A+GSG  AA++ LE  + P++T E A  L+  A+  GI  D+GSG NVD
Sbjct: 154 PHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVD 213

Query: 585 LCIITKDGAENIRTYEEAHKKGVRFNKYQFPEGTTPLLKSIVRPVEMEIVSTRI 746
            C+ITK GA+ +RT     +   R  +Y F  GTT +L   V+P+ +E+V   +
Sbjct: 214 ACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLELVEETV 267
>sp|O35955|PSBA_MOUSE Proteasome subunit beta type 10 precursor (Proteasome MECl-1)
           (Macropain subunit MECl-1) (Multicatalytic endopeptidase
           complex subunit MECl-1)
          Length = 273

 Score =  239 bits (609), Expect = 9e-63
 Identities = 116/234 (49%), Positives = 160/234 (68%)
 Frame = +3

Query: 45  RKTGTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADTEFVT 224
           RKTGTTI G+++ +GV+LGADTRAT  ++VA+K+C+KIH+I+  IYCCGAG AADTE  T
Sbjct: 36  RKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTT 95

Query: 225 RNISSKIRIHHKLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVDFEGAKLVSIH 404
           R  +SK+ +H       R+PRV   T +L+Q LFRYQGHVGA+L++GGVD  G +L  +H
Sbjct: 96  RMAASKMELHAL--STGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVH 153

Query: 405 PHGSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSGSNVD 584
           PHGS   +P+ A+GSG  AA++ LE  + P++T E A EL+  AI  GI  D+GSG NVD
Sbjct: 154 PHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVD 213

Query: 585 LCIITKDGAENIRTYEEAHKKGVRFNKYQFPEGTTPLLKSIVRPVEMEIVSTRI 746
            C+IT  GA+  R      +   R  +Y+F  GTTP+L   VRP+ +E++   +
Sbjct: 214 ACVITAGGAKLQRALSTPTEPVQRAGRYRFAPGTTPVLTREVRPLTLELLEETV 267
>sp|P25043|PSB7_YEAST Proteasome component PUP1 precursor (Macropain subunit PUP1)
           (Proteinase YSCE subunit PUP1) (Multicatalytic
           endopeptidase complex subunit PUP1)
          Length = 261

 Score =  229 bits (583), Expect = 9e-60
 Identities = 131/246 (53%), Positives = 170/246 (69%), Gaps = 3/246 (1%)
 Frame = +3

Query: 51  TGTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADTEFVTRN 230
           TGTTIVGV +N GVV+ ADTR+T+G IVA+KNC K+H IS  I+C GAGTAADTE VT+ 
Sbjct: 28  TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQL 87

Query: 231 ISSKIRIHHKLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVDFEGAKLVSIHPH 410
           I S I +H       R+PRVV A  MLKQ+LF+YQGH+GA LI+ GVD  G+ L SIH H
Sbjct: 88  IGSNIELHSLYTS--REPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAH 145

Query: 411 GSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSGSNVDLC 590
           GS+D   Y ++GSGSLAA++ LES +  DLTKEEA++L   AI+ GI +D+GSGSNVD+C
Sbjct: 146 GSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVC 205

Query: 591 I--ITKDGAENIRTYEEAHKKGVRFNKYQFPEGTTPLLK-SIVRPVEMEIVSTRIIRDLP 761
           +  I KD AE +R Y   + +  +   Y+FP GTT +LK SIV            I D+ 
Sbjct: 206 VMEIGKD-AEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVN-----------ICDIQ 253

Query: 762 QEEMEI 779
           +E+++I
Sbjct: 254 EEQVDI 259
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type 6 precursor (Proteasome delta chain)
           (Tobacco cryptogein-induced protein 7) (tcI 7)
          Length = 234

 Score =  110 bits (276), Expect = 4e-24
 Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 2/188 (1%)
 Frame = +3

Query: 54  GTTIVGVIYNEGVVLGADTRATEGNIVAEKNCQKIHYISDNIYCCGAGTAADTEFVTRNI 233
           GTTI+GV YN GVVLGAD+R + G  VA +   KI  ++DN+Y C +G+AAD++ V+  +
Sbjct: 13  GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYV 72

Query: 234 SSKIRIHH-KLGDPRRKPRVVMATHMLKQYLFRYQGHVGAALILGGVD-FEGAKLVSIHP 407
              +  H  +LG P     V +A ++ +   +  +  +   +I+GG D +EG K+  I P
Sbjct: 73  RYFLHQHTIQLGQP---ATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPP 129

Query: 408 HGSSDAVPYAAMGSGSLAAISELESLYHPDLTKEEAMELVRRAIRKGIDHDMGSGSNVDL 587
            G+    P+A  GSGS       +  +   +T+EEA +LV  A+   I  D  SG  V  
Sbjct: 130 GGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVVRT 189

Query: 588 CIITKDGA 611
             I KDGA
Sbjct: 190 VTINKDGA 197
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,717,343
Number of Sequences: 369166
Number of extensions: 1644731
Number of successful extensions: 4831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4727
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)