Planaria EST Database


DrC_02458

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02458
         (926 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M8D3|PUR4_ARATH  Probable phosphoribosylformylglycinami...    35   0.30 
sp|Q8A2A1|IF2_BACTN  Translation initiation factor IF-2            35   0.39 
sp|P48415|SEC16_YEAST  Multidomain vesicle coat protein            34   0.51 
sp|O60237|MYPT2_HUMAN  Protein phosphatase 1 regulatory subu...    34   0.67 
sp|P53210|YG1B_YEAST  Hypothetical 34.7 kDa protein in MSB2-...    33   0.87 
sp|Q98PF2|SYN_MYCPU  Asparaginyl-tRNA synthetase (Asparagine...    33   1.5  
sp|P30419|NMT1_HUMAN  Glycylpeptide N-tetradecanoyltransfera...    32   2.5  
sp|Q5R741|ZN394_PONPY  Zinc finger protein 394                     32   2.5  
sp|Q00383|YCF1_EPIVI  Hypothetical 208 kDa protein ycf1 (ORF...    32   3.3  
sp|Q6DBP8|GATA6_ARATH  GATA transcription factor 6 (AtGATA-6)      31   4.3  
>sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplast
            precursor (FGAM synthase) (FGAMS) (Formylglycinamide
            ribotide amidotransferase) (FGARAT) (Formylglycinamide
            ribotide synthetase)
          Length = 1387

 Score = 35.0 bits (79), Expect = 0.30
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
 Frame = +2

Query: 500  YCDDDRSSNQTSSH------QPPNRAATASGDRCH---NPHPSKAFLVWRFP 628
            YCDDD   N T ++       P   AA  S D  H    PHP + FL+W+FP
Sbjct: 1308 YCDDD--GNVTEAYPFNLNGSPLGIAAICSPDGRHLAMMPHPERCFLMWQFP 1357
>sp|Q8A2A1|IF2_BACTN Translation initiation factor IF-2
          Length = 1040

 Score = 34.7 bits (78), Expect = 0.39
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
 Frame = +2

Query: 68  IIVAKSIIKPGLKNSLENFILQTNKAKDREKALEILNSIEDYNKRFNRNNNLVKEYKLKT 247
           ++V +      L+   E FI Q  + K+R KA     SIE + K+  +  +   E  +KT
Sbjct: 45  VLVKEFSTDKNLRLESERFI-QERQNKERNKASV---SIEGFEKQQEKPKS---EDVIKT 97

Query: 248 ALQRPKTAGSRFK-----DGPFIHQYSTTYTEDFPKKKLE----ETIANRPASTENLISR 400
            +  P+ A  +FK     D        T   E  P+KK+E    + +  +P + + ++ +
Sbjct: 98  VV--PEDARPKFKPVGKIDLDKFSGRRTDKVEKAPEKKVEPVVEQPVVEQPVAEKTVVEK 155

Query: 401 PISSTEIKSEMKNREKL 451
           P+  +E+K E    EK+
Sbjct: 156 PVVESEVKKEEPKVEKV 172
>sp|P48415|SEC16_YEAST Multidomain vesicle coat protein
          Length = 2195

 Score = 34.3 bits (77), Expect = 0.51
 Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 25/246 (10%)
 Frame = +2

Query: 125  ILQTN---KAKDREKALEILNSIEDYNKRFNRNNNLVKEYKLKTALQRPKTAGSRFKDGP 295
            ILQTN   +  D  K    L SIE+      +  N+ K     ++   P T G   ++ P
Sbjct: 1742 ILQTNVEVRGTDASKMENSLPSIENERSSEEQPENISKS---ASSAYLPSTGGLSLENRP 1798

Query: 296  FIHQYSTTYTEDFPKKKLEETIANR--PASTENLISRPISSTE-------------IKSE 430
                     T+D  +  + ET+ +   PA + ++ ++PIS  +             ++  
Sbjct: 1799 L--------TQD--ENSISETVQSTYLPAGSISMEAKPISQVQDVPRNVNNKASKLVEQH 1848

Query: 431  M-----KNREKLFKSYSTYDPRSTYTNDYCDDDRSSNQTSSHQPPNRAATASGDRCHNPH 595
            M     K+ +    +YS Y P+ST  +   D D S+   +S      A  A   + H  +
Sbjct: 1849 MAPPKPKSTDATKMNYSPYVPQSTAAS--ADGDESTILKTS-----PAIYARTHQAHASN 1901

Query: 596  PSKAFLVWRFpreSVNKETRVPSETALKINMENNFAQINDDQFNRVMRGNC--KSTYQAD 769
            PS+ F +     E+ + E    SE+  +     N A  ++++F+ + +     K T+Q  
Sbjct: 1902 PSQYFPLVNQANETASFEL---SESTSQAQSNGNVA--SENRFSPIKKAEVVEKDTFQPT 1956

Query: 770  FRGGST 787
             R  ST
Sbjct: 1957 IRKAST 1962
>sp|O60237|MYPT2_HUMAN Protein phosphatase 1 regulatory subunit 12B (Myosin phosphatase
           targeting subunit 2) (Myosin phosphatase target subunit
           2)
          Length = 982

 Score = 33.9 bits (76), Expect = 0.67
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 16/112 (14%)
 Frame = +2

Query: 128 LQTNKAKDREKALEI-------LNSIEDYNKRFNRNN--NLVKEYKLKTALQRPKTAGSR 280
           L  NK K+RE    I       LNS  D  ++ NR +  NLV+       L R +  G+ 
Sbjct: 480 LLDNKDKERENKSYISSLAPRKLNSTSDIEEKENRESAVNLVRSGSYTRQLWRDEAKGNE 539

Query: 281 FKDGPFIHQYSTTYTEDFPKKKLEETIANRPASTEN-------LISRPISST 415
                    Y +TY +  P K   +T A + A   +       + +RP+ ST
Sbjct: 540 IPQTIAPSTYVSTYLKRTPHKSQADTTAEKTADNVSSSTPLCVITNRPLPST 591
>sp|P53210|YG1B_YEAST Hypothetical 34.7 kDa protein in MSB2-UGA1 intergenic region
          Length = 297

 Score = 33.5 bits (75), Expect = 0.87
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
 Frame = +2

Query: 377 STENLISRPISST-EIKSEMKNREKLFKSYSTYDPRSTYTNDYCDDDRSSNQTSSHQPPN 553
           +TE  +S   ++  E+ ++ + R  +F+ +  +D R+     +  D RSS  T S   PN
Sbjct: 19  NTEPFVSFQFATVDELTNKPRCRTVVFRDFLFHDKRTNVLT-FNTDMRSSKITESFITPN 77

Query: 554 RAATASGDRCHNPHPSKAFLV------WRFpre--SVNKE-TRVPSETALKINM-ENNFA 703
              ++   RC  P     F        +RF  +  +++K+  ++P+E   K ++    F+
Sbjct: 78  SNNSSDSKRCETPFFEACFYFPETWEQYRFSGQCFTISKQFKKIPAEIVTKYDIFSPRFS 137

Query: 704 QINDD 718
           + NDD
Sbjct: 138 ETNDD 142
>sp|Q98PF2|SYN_MYCPU Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS)
          Length = 450

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = +2

Query: 65  EIIVAKSIIKPGLKNSLENFILQTNKAKDREKALEILNSIEDYNKRFNRNNNLVKEYKLK 244
           E++   + IKPGL  SLE+F+    +  +  K +EIL    + NK F    N+     LK
Sbjct: 267 ELVFLDTHIKPGLIQSLEDFLESNLEIIEYRKVIEIL----EKNKVFFEEQNIEFGMDLK 322

Query: 245 TALQR 259
           T  +R
Sbjct: 323 TEHER 327
>sp|P30419|NMT1_HUMAN Glycylpeptide N-tetradecanoyltransferase 1 (Peptide
           N-myristoyltransferase 1) (Myristoyl-CoA:protein
           N-myristoyltransferase 1) (NMT 1) (Type I
           N-myristoyltransferase)
          Length = 496

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 182 IEDYNKRFNRNNNLVKEYKLKTALQRPKTAGSR---FKDGPFIHQYSTTYTEDF 334
           IE      +RN  + +  KL    + PKTAG R    KD P +HQ  T Y + F
Sbjct: 307 IEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQF 360
>sp|Q5R741|ZN394_PONPY Zinc finger protein 394
          Length = 574

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
 Frame = +2

Query: 185 EDYNKRFNRNNNLVKEYKLKTALQRPKTA---GSRFKDGPFIHQYSTTYTEDFPKKKLEE 355
           ++  K F+++  L K  +  T  ++P T    G RF+    ++++ +T++ D    K EE
Sbjct: 389 QECGKSFSQSAALTKHQRTHTG-EKPYTCLKCGERFRQNSHLNRHQSTHSRD-KHFKCEE 446

Query: 356 TIANRPASTENLI--------SRPISSTEIKSEMKNREKLFKSYSTYDPRSTYTNDYC 505
                     NL          RP    E K   K R  LFK +  +     Y    C
Sbjct: 447 --CGETCRISNLFRHQRLHKGERPYKCEECKKSFKQRSDLFKHHRIHTGEKPYGCSVC 502
>sp|Q00383|YCF1_EPIVI Hypothetical 208 kDa protein ycf1 (ORF 1738)
          Length = 1738

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
 Frame = +2

Query: 89  IKPGLKNSLENFILQTNKAKDREKALEILNSIEDYNKRFNR-----------NNNLVKEY 235
           ++  L N L NF L TNK   +    E +N IE  +K+F             N+N  KEY
Sbjct: 439 LEKALTNKLSNFWLYTNKKSIKNFTDEFINRIEALDKKFISYNILETRTRLCNDNYTKEY 498

Query: 236 KLK 244
             K
Sbjct: 499 LSK 501
>sp|Q6DBP8|GATA6_ARATH GATA transcription factor 6 (AtGATA-6)
          Length = 303

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 26/101 (25%), Positives = 38/101 (37%)
 Frame = +2

Query: 365 NRPASTENLISRPISSTEIKSEMKNREKLFKSYSTYDPRSTYTNDYCDDDRSSNQTSSHQ 544
           N PA  ++  S  +SST  +S      K+ K + +  P S   N Y      S  T ++ 
Sbjct: 85  NIPALKQSYSSEALSSTLHQSSAPPEIKVSKLFQSLSPVSVLENSY-----GSLSTHNNG 139

Query: 545 PPNRAATASGDRCHNPHPSKAFLVWRFpreSVNKETRVPSE 667
               A    G R     P+   L + FP E    E   P +
Sbjct: 140 SQRLAFPVKGMRSKRKRPTTLRLSYLFPSEPRKPEKSTPGK 180
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,238,233
Number of Sequences: 369166
Number of extensions: 1912742
Number of successful extensions: 6147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6137
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)