Planaria EST Database


DrC_02457

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02457
         (739 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P81133|SIM1_HUMAN  Single-minded homolog 1                      34   0.36 
sp|Q61045|SIM1_MOUSE  Single-minded homolog 1 (mSIM1)              34   0.46 
sp|Q61079|SIM2_MOUSE  Single-minded homolog 2 (SIM transcrip...    33   0.79 
sp|Q14190|SIM2_HUMAN  Single-minded homolog 2                      33   1.0  
sp|P04954|GUND_CLOTM  Endoglucanase D precursor (EGD) (Endo-...    30   6.7  
>sp|P81133|SIM1_HUMAN Single-minded homolog 1
          Length = 766

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -3

Query: 716 AKKSVK*AMSVFVFN-KFSFKCLSLLSRNSKKVSISVKNLVKPKLYDSVH*CDELISRSS 540
           A   +K   ++F+F      K + L SR ++      ++L++  LY  VH CD    R +
Sbjct: 221 AVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHLRCA 280

Query: 539 PHLLCTTAQITAYSTHCFGFVLLH 468
            HLL    Q+T   T  + F+  H
Sbjct: 281 HHLLLVKGQVT---TKYYRFLAKH 301
>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 (mSIM1)
          Length = 765

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -3

Query: 716 AKKSVK*AMSVFVFN-KFSFKCLSLLSRNSKKVSISVKNLVKPKLYDSVH*CDELISRSS 540
           A   +K   ++F+F      K + L SR ++      ++L++  LY  VH CD    R +
Sbjct: 221 AVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHLRCA 280

Query: 539 PHLLCTTAQIT 507
            HLL    Q+T
Sbjct: 281 HHLLLVKGQVT 291
>sp|Q61079|SIM2_MOUSE Single-minded homolog 2 (SIM transcription factor) (mSIM)
          Length = 657

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 704 VK*AMSVFVFN-KFSFKCLSLLSRNSKKVSISVKNLVKPKLYDSVH*CDELISRSSPHLL 528
           +K   ++F+F      K + L SR ++      ++L++  LY  VH CD    R + HLL
Sbjct: 225 IKLHSNMFMFRASLDLKLIFLDSRVTELTGYEPQDLIEKTLYHHVHGCDTFHLRYAHHLL 284

Query: 527 CTTAQIT 507
               Q+T
Sbjct: 285 LVKGQVT 291
>sp|Q14190|SIM2_HUMAN Single-minded homolog 2
          Length = 667

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 704 VK*AMSVFVFN-KFSFKCLSLLSRNSKKVSISVKNLVKPKLYDSVH*CDELISRSSPHLL 528
           +K   ++F+F      K + L SR ++      ++L++  LY  VH CD    R + HLL
Sbjct: 225 IKLYSNMFMFRASLDLKLIFLDSRVTEVTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLL 284

Query: 527 CTTAQIT 507
               Q+T
Sbjct: 285 LVKGQVT 291
>sp|P04954|GUND_CLOTM Endoglucanase D precursor (EGD) (Endo-1,4-beta-glucanase)
           (Cellulase D)
          Length = 649

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +2

Query: 2   IPSSNNSIQRRIDEMSYDIENFLIYYFQTTHFSIQLDESTLLGKDTLLLAYVRFIMDQNT 181
           IP  NNSI   +DE+ Y+I+  L   +         D S  +        +  FIM +N 
Sbjct: 234 IPEKNNSIPDFLDELKYEIDWILTMQYP--------DGSGRVAHKVSTRNFGGFIMPENE 285

Query: 182 HKELIF 199
           H E  F
Sbjct: 286 HDERFF 291
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,327,677
Number of Sequences: 369166
Number of extensions: 1450737
Number of successful extensions: 3475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3475
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)