Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H17
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P81133|SIM1_HUMAN Single-minded homolog 1 34 0.36
sp|Q61045|SIM1_MOUSE Single-minded homolog 1 (mSIM1) 34 0.46
sp|Q61079|SIM2_MOUSE Single-minded homolog 2 (SIM transcrip... 33 0.79
sp|Q14190|SIM2_HUMAN Single-minded homolog 2 33 1.0
sp|P04954|GUND_CLOTM Endoglucanase D precursor (EGD) (Endo-... 30 6.7
>sp|P81133|SIM1_HUMAN Single-minded homolog 1
Length = 766
Score = 34.3 bits (77), Expect = 0.36
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = -3
Query: 716 AKKSVK*AMSVFVFN-KFSFKCLSLLSRNSKKVSISVKNLVKPKLYDSVH*CDELISRSS 540
A +K ++F+F K + L SR ++ ++L++ LY VH CD R +
Sbjct: 221 AVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHLRCA 280
Query: 539 PHLLCTTAQITAYSTHCFGFVLLH 468
HLL Q+T T + F+ H
Sbjct: 281 HHLLLVKGQVT---TKYYRFLAKH 301
>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 (mSIM1)
Length = 765
Score = 33.9 bits (76), Expect = 0.46
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -3
Query: 716 AKKSVK*AMSVFVFN-KFSFKCLSLLSRNSKKVSISVKNLVKPKLYDSVH*CDELISRSS 540
A +K ++F+F K + L SR ++ ++L++ LY VH CD R +
Sbjct: 221 AVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHLRCA 280
Query: 539 PHLLCTTAQIT 507
HLL Q+T
Sbjct: 281 HHLLLVKGQVT 291
>sp|Q61079|SIM2_MOUSE Single-minded homolog 2 (SIM transcription factor) (mSIM)
Length = 657
Score = 33.1 bits (74), Expect = 0.79
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 704 VK*AMSVFVFN-KFSFKCLSLLSRNSKKVSISVKNLVKPKLYDSVH*CDELISRSSPHLL 528
+K ++F+F K + L SR ++ ++L++ LY VH CD R + HLL
Sbjct: 225 IKLHSNMFMFRASLDLKLIFLDSRVTELTGYEPQDLIEKTLYHHVHGCDTFHLRYAHHLL 284
Query: 527 CTTAQIT 507
Q+T
Sbjct: 285 LVKGQVT 291
>sp|Q14190|SIM2_HUMAN Single-minded homolog 2
Length = 667
Score = 32.7 bits (73), Expect = 1.0
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 704 VK*AMSVFVFN-KFSFKCLSLLSRNSKKVSISVKNLVKPKLYDSVH*CDELISRSSPHLL 528
+K ++F+F K + L SR ++ ++L++ LY VH CD R + HLL
Sbjct: 225 IKLYSNMFMFRASLDLKLIFLDSRVTEVTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLL 284
Query: 527 CTTAQIT 507
Q+T
Sbjct: 285 LVKGQVT 291
>sp|P04954|GUND_CLOTM Endoglucanase D precursor (EGD) (Endo-1,4-beta-glucanase)
(Cellulase D)
Length = 649
Score = 30.0 bits (66), Expect = 6.7
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +2
Query: 2 IPSSNNSIQRRIDEMSYDIENFLIYYFQTTHFSIQLDESTLLGKDTLLLAYVRFIMDQNT 181
IP NNSI +DE+ Y+I+ L + D S + + FIM +N
Sbjct: 234 IPEKNNSIPDFLDELKYEIDWILTMQYP--------DGSGRVAHKVSTRNFGGFIMPENE 285
Query: 182 HKELIF 199
H E F
Sbjct: 286 HDERFF 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,327,677
Number of Sequences: 369166
Number of extensions: 1450737
Number of successful extensions: 3475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3475
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)