Planaria EST Database


DrC_02449

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02449
         (394 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19623|SPEE_HUMAN  Spermidine synthase (Putrescine aminop...    84   1e-16
sp|Q64674|SPEE_MOUSE  Spermidine synthase (Putrescine aminop...    84   1e-16
sp|Q09741|SPEE_SCHPO  Spermidine synthase (Putrescine aminop...    79   3e-15
sp|Q9Y8H7|SPEE_NEUCR  Spermidine synthase (Putrescine aminop...    76   3e-14
sp|Q9SMB1|SPD1_ORYSA  Spermidine synthase 1 (Putrescine amin...    75   5e-14
sp|Q12074|SPEE_YEAST  Spermidine synthase (Putrescine aminop...    74   1e-13
sp|O48661|SPD2_ARATH  Spermidine synthase 2 (Putrescine amin...    74   1e-13
sp|Q12455|SPSY_YEAST  Spermine synthase (Spermidine aminopro...    72   3e-13
sp|Q9ZUB3|SPD1_ARATH  Spermidine synthase 1 (Putrescine amin...    72   5e-13
sp|O48659|SPD2_HYONI  Spermidine synthase 2 (Putrescine amin...    71   9e-13
>sp|P19623|SPEE_HUMAN Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY)
          Length = 302

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFPNVKYASGCVPTYPLGQIGYLLCSKNPDTNFS---KPLF 172
           E  W    ++ ++    +++FP V YA   +PTYP GQIG++LCSKNP TNF    +PL 
Sbjct: 208 ECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLT 267

Query: 173 DVSTIENQFKYYSSDIHTASFVLPNCMKHIIN 268
                + Q KYY+SD+H A+FVLP   +  +N
Sbjct: 268 QQQVAQMQLKYYNSDVHRAAFVLPEFARKALN 299
>sp|Q64674|SPEE_MOUSE Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY)
          Length = 302

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFPNVKYASGCVPTYPLGQIGYLLCSKNPDTNFSKP---LF 172
           E  W    ++ ++    K++FP V YA   +PTYP GQIG++LCSKNP TNF +P   L 
Sbjct: 208 ECQWLHLDLIKEMRHFCKSLFPVVDYAYCSIPTYPSGQIGFMLCSKNPSTNFREPVQQLT 267

Query: 173 DVSTIENQFKYYSSDIHTASFVLPNCMKHIIN 268
                + Q KYY+SD+H A+FVLP   +  +N
Sbjct: 268 QAQVEQMQLKYYNSDMHRAAFVLPEFTRKALN 299
>sp|Q09741|SPEE_SCHPO Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY)
          Length = 298

 Score = 79.3 bits (194), Expect = 3e-15
 Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFPNVKYASGCVPTYPLGQIGYLLCSKNPDTNFSKPLFDVS 181
           E +W    ++S+++   K VFPNV+YA   +PTYP G IG+++ SK+   + SKPL   S
Sbjct: 203 ECMWIHLGVISNVLTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASKDASIDLSKPLRKWS 262

Query: 182 TIENQ--FKYYSSDIHTASFVLPNCMKHIIN 268
             E     KYY+S+IH ASFVLP   + +++
Sbjct: 263 PEEENKLCKYYNSEIHAASFVLPTFARDVVD 293
>sp|Q9Y8H7|SPEE_NEUCR Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY)
          Length = 291

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFPNVKYASGCVPTYPLGQIGYLLCSKNPDTNFSKPLFDVS 181
           E+ W    +++ L    K VFP  +YA   +PTYP GQIG+++CSK+P+ N   PL   S
Sbjct: 201 ENQWLHLPLITKLKKDCKEVFPVAEYAYTTIPTYPSGQIGFMVCSKDPNANVKVPLRSWS 260

Query: 182 TIENQ--FKYYSSDIHTASFVLPNCMK 256
             E +   +YY+S+IH ASF+LP   K
Sbjct: 261 QEEEEKLCRYYNSEIHKASFILPTFAK 287
>sp|Q9SMB1|SPD1_ORYSA Spermidine synthase 1 (Putrescine aminopropyltransferase 1) (SPDSY
           1)
          Length = 323

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 10/98 (10%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFP-NVKYASGCVPTYPLGQIGYLLCS-KNPDTNFSKPLFD 175
           ESIW    I+ D+V   + VF  +V YA   VPTYP G IG++LCS + P  +F  P+F+
Sbjct: 223 ESIWLHMHIIEDIVANCRQVFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPTVDFQHPIFN 282

Query: 176 VSTIENQF--------KYYSSDIHTASFVLPNCMKHII 265
           +   +N+F        K+Y+S+IH+ASF LP+  K +I
Sbjct: 283 IE--DNEFSTKSKGPLKFYNSEIHSASFCLPSFAKRVI 318
>sp|Q12074|SPEE_YEAST Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY)
          Length = 293

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFPNVKYASGCVPTYPLGQIGYLLCSKNPDTNFSKPLFDVS 181
           ES+W    I+ DL      VFP  +Y+   +PTYP G IG+++CSK+   N  KPL ++S
Sbjct: 203 ESMWIHLPIIKDLKKACSEVFPVAEYSFVTIPTYPTGTIGFMVCSKDKTCNVKKPLREIS 262

Query: 182 TIENQ--FKYYSSDIHTASFVLP 244
             +    ++YY+  IH ASFVLP
Sbjct: 263 DEKEAELYRYYNKKIHEASFVLP 285
>sp|O48661|SPD2_ARATH Spermidine synthase 2 (Putrescine aminopropyltransferase 2) (SPDSY
           2)
          Length = 340

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 8/97 (8%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFP-NVKYASGCVPTYPLGQIGYLLC-SKNPDTNFSKPLFD 175
           ES+W    I+ D+V   + +F  +V YA   VPTYP G IG++LC S+ P  +F KP+  
Sbjct: 240 ESLWLHMDIIEDIVSNCRDIFKGSVNYAWTSVPTYPSGVIGFMLCSSEGPQVDFKKPVSL 299

Query: 176 VSTIENQ------FKYYSSDIHTASFVLPNCMKHIIN 268
           + T E+        KYY+++IH+A+F LP+  K +I+
Sbjct: 300 IDTDESSIKSHCPLKYYNAEIHSAAFCLPSFAKKVID 336
>sp|Q12455|SPSY_YEAST Spermine synthase (Spermidine aminopropyltransferase) (SPMSY)
          Length = 300

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFPNVKYASGCVPTYPLGQIGYLLCSKNPDTNFSKPLFDVS 181
           E+ W   K + DL + AK VFPN +Y    VPTY  GQ+G ++CS N +   + P   +S
Sbjct: 210 ENFWLNLKYLHDLKNTAKKVFPNTEYCYTMVPTYTSGQLGLIVCSNNANIPLNIPQRKIS 269

Query: 182 TIE-NQFKYYSSDIHTASFVLPNCMKHIIN 268
             E  + KYY+  IH+++FVLP     +IN
Sbjct: 270 EQEQGKLKYYNPQIHSSAFVLPTWADKVIN 299
>sp|Q9ZUB3|SPD1_ARATH Spermidine synthase 1 (Putrescine aminopropyltransferase 1) (SPDSY
           1)
          Length = 334

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFP-NVKYASGCVPTYPLGQIGYLLCS-KNPDTNFSKPLFD 175
           ES+W    I+ D+V   + +F  +V YA   VPTYP G IG++LCS + PD +F  PL  
Sbjct: 236 ESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFKHPLNP 295

Query: 176 V----STIENQFKYYSSDIHTASFVLPNCMKHII 265
           +    S      K+Y+++IH+A+F LP+  K +I
Sbjct: 296 IDESSSKSNGPLKFYNAEIHSAAFCLPSFAKKVI 329
>sp|O48659|SPD2_HYONI Spermidine synthase 2 (Putrescine aminopropyltransferase 2) (SPDSY
           2)
          Length = 308

 Score = 70.9 bits (172), Expect = 9e-13
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
 Frame = +2

Query: 2   ESIWFENKIVSDLVDKAKAVFP-NVKYASGCVPTYPLGQIGYLLCS-KNPDTNFSKPLFD 175
           ESIW    I+ D+V   + +F  +V YA   VPTYP G IG++LCS + P  +F  P+  
Sbjct: 208 ESIWLHMHIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPINP 267

Query: 176 VSTIENQ------FKYYSSDIHTASFVLPNCMKHII 265
           +   ++        K+Y+S+IH+ASF LP+  K +I
Sbjct: 268 IDADDSHTKTRGPLKFYNSEIHSASFCLPSFAKRVI 303
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,508,413
Number of Sequences: 369166
Number of extensions: 753364
Number of successful extensions: 2131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2089
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)