Planaria EST Database


DrC_02448

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02448
         (542 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q81N41|SYH1_BACAN  Histidyl-tRNA synthetase 1 (Histidine-...    36   0.053
sp|Q01360|AMIE_RHOER  Aliphatic amidase (Acylamide amidohydr...    33   0.58 
sp|Q22909|HM30_CAEEL  Homeobox protein ceh-30                      31   2.2  
sp|Q9MLJ8|CYB_BUNFA  Cytochrome b                                  31   2.2  
sp|Q9VP04|ORMDL_DROME  ORM1-like protein (dORMDL)                  30   3.8  
sp|Q8EPQ5|RUVA_OCEIH  Holliday junction DNA helicase ruvA          30   3.8  
sp|P20607|IL6_RAT  Interleukin-6 precursor (IL-6)                  30   4.9  
sp|Q8FY05|PPCK_BRUSU  Phosphoenolpyruvate carboxykinase [ATP...    30   4.9  
sp|Q981H7|ALR3_RHILO  Alanine racemase 3                           30   4.9  
sp|Q8YE41|PPCK_BRUME  Phosphoenolpyruvate carboxykinase [ATP...    30   4.9  
>sp|Q81N41|SYH1_BACAN Histidyl-tRNA synthetase 1 (Histidine--tRNA ligase 1) (HisRS 1)
          Length = 425

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +1

Query: 85  VPDYEKLRSNIEHDLKDAFEVFDCEIVDCPDLTQEPFLLCGKGSN*NLLKNLISYQDYVG 264
           +P+ + LRS I+   +D FE + C+ ++ P L     +    G    +LK + + QD  G
Sbjct: 13  LPEEQVLRSKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ-G 71

Query: 265 KQPLLMLEELGI 300
           K+ L +  +L I
Sbjct: 72  KRDLALRYDLTI 83
>sp|Q01360|AMIE_RHOER Aliphatic amidase (Acylamide amidohydrolase) (Wide spectrum
           amidase)
          Length = 345

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 61  PFKFYDLLVPDYEKLRSNIEHDLKDAFEVFDCEIVDCP 174
           PF+FY L V D +K +  +E   +D   V DC + + P
Sbjct: 301 PFEFYKLWVTDAQKAQERVEAITRDTVGVADCRVGNLP 338
>sp|Q22909|HM30_CAEEL Homeobox protein ceh-30
          Length = 299

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -2

Query: 262 PHNPDKK*DFSIDFSLNLFHIIKMAPESNQDNQQSHNQTPQKHLLNRAQYLISISHNLEP 83
           P  P ++   S  F+L+  H     P S+ +NQ S++  P+  LL+  Q+L+   + L+P
Sbjct: 27  PKLPGRRPAHSRTFNLSYSH-----PSSSDNNQSSYHSLPKMSLLDPRQFLLPAFY-LDP 80

Query: 82  TNHKI 68
           T   +
Sbjct: 81  TTQAL 85
>sp|Q9MLJ8|CYB_BUNFA Cytochrome b
          Length = 370

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
 Frame = -2

Query: 466 PKHQY--------MINHPQLTSQLTPISKNGPTAAPQMNPFANWQSAKISWKSYFLSLFG 311
           P H Y        MI    +T   TP   N P    + NP    Q  K  W  YFL  +G
Sbjct: 214 PYHSYKDMLMITIMITMLFITMSFTPNLLNDPENFSKANPLLTPQHIKPEW--YFLFAYG 271

Query: 310 VGRKYPIPPTSTMA 269
           + R  P     TMA
Sbjct: 272 ILRSIPNKLGGTMA 285
>sp|Q9VP04|ORMDL_DROME ORM1-like protein (dORMDL)
          Length = 154

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
 Frame = -2

Query: 382 QMNPFANWQSAKISWKSYFLSLFGVGRKY------PIPPTSTMAAFPHNPDKK*DFSIDF 221
           + NP ++W SA+  W +Y L L  V   +       IP   T     HN           
Sbjct: 10  EANPNSSWLSARGFWLAYLLGLLSVHLLFLSVPFVSIPWAWTATNLLHNA---------A 60

Query: 220 SLNLFHIIKMAPESNQDNQQSHNQT 146
            L   H+IK AP  + +N  S   T
Sbjct: 61  HLYFLHVIKGAPWLSTENDPSRRWT 85
>sp|Q8EPQ5|RUVA_OCEIH Holliday junction DNA helicase ruvA
          Length = 201

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 246 LSGLCGKAAIVDVGGIGYFLPTPNKDKKYDFQEIL 350
           L+ L  ++ IVDVGGIGY +  PN    + FQ++L
Sbjct: 9   LNSLGDESLIVDVGGIGYEIVCPN---PFVFQDLL 40
>sp|P20607|IL6_RAT Interleukin-6 precursor (IL-6)
          Length = 211

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 449 DKSSPTNLAINPNLKKRTNCSST--NESVC*LAICQNFLEIIFFI-FVRS 309
           D  S  NL + P +++   C  T  N+ +C L IC   LE  F++ FV++
Sbjct: 81  DALSENNLKL-PEIQRNDGCFQTGYNQEICLLKICSGLLEFRFYLEFVKN 129
>sp|Q8FY05|PPCK_BRUSU Phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase)
           (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 536

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 67  KFYDLLVPDYEKLRSNIEHDLKDA 138
           K  D+ V ++EK  S+++H++KDA
Sbjct: 504 KLVDMFVSNFEKFESHVDHEVKDA 527
>sp|Q981H7|ALR3_RHILO Alanine racemase 3
          Length = 388

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 175 DLTQEPFLLCGKGSN*NLLKNLISYQDY---VGKQPLLMLEELGIFC 306
           D+T  P  LCG G+N  LL +  +  D     G  P  +L  LG+ C
Sbjct: 310 DVTDVPEALCGPGTNVELLSDDFTVDDLAASAGVHPQEVLTRLGVGC 356
>sp|Q8YE41|PPCK_BRUME Phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase)
           (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 536

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 67  KFYDLLVPDYEKLRSNIEHDLKDA 138
           K  D+ V ++EK  S+++H++KDA
Sbjct: 504 KLVDMFVSNFEKFESHVDHEVKDA 527
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,068,455
Number of Sequences: 369166
Number of extensions: 1402916
Number of successful extensions: 3895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3894
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)