Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_F21
(542 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q81N41|SYH1_BACAN Histidyl-tRNA synthetase 1 (Histidine-... 36 0.053
sp|Q01360|AMIE_RHOER Aliphatic amidase (Acylamide amidohydr... 33 0.58
sp|Q22909|HM30_CAEEL Homeobox protein ceh-30 31 2.2
sp|Q9MLJ8|CYB_BUNFA Cytochrome b 31 2.2
sp|Q9VP04|ORMDL_DROME ORM1-like protein (dORMDL) 30 3.8
sp|Q8EPQ5|RUVA_OCEIH Holliday junction DNA helicase ruvA 30 3.8
sp|P20607|IL6_RAT Interleukin-6 precursor (IL-6) 30 4.9
sp|Q8FY05|PPCK_BRUSU Phosphoenolpyruvate carboxykinase [ATP... 30 4.9
sp|Q981H7|ALR3_RHILO Alanine racemase 3 30 4.9
sp|Q8YE41|PPCK_BRUME Phosphoenolpyruvate carboxykinase [ATP... 30 4.9
>sp|Q81N41|SYH1_BACAN Histidyl-tRNA synthetase 1 (Histidine--tRNA ligase 1) (HisRS 1)
Length = 425
Score = 36.2 bits (82), Expect = 0.053
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 85 VPDYEKLRSNIEHDLKDAFEVFDCEIVDCPDLTQEPFLLCGKGSN*NLLKNLISYQDYVG 264
+P+ + LRS I+ +D FE + C+ ++ P L + G +LK + + QD G
Sbjct: 13 LPEEQVLRSKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ-G 71
Query: 265 KQPLLMLEELGI 300
K+ L + +L I
Sbjct: 72 KRDLALRYDLTI 83
>sp|Q01360|AMIE_RHOER Aliphatic amidase (Acylamide amidohydrolase) (Wide spectrum
amidase)
Length = 345
Score = 32.7 bits (73), Expect = 0.58
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 61 PFKFYDLLVPDYEKLRSNIEHDLKDAFEVFDCEIVDCP 174
PF+FY L V D +K + +E +D V DC + + P
Sbjct: 301 PFEFYKLWVTDAQKAQERVEAITRDTVGVADCRVGNLP 338
>sp|Q22909|HM30_CAEEL Homeobox protein ceh-30
Length = 299
Score = 30.8 bits (68), Expect = 2.2
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -2
Query: 262 PHNPDKK*DFSIDFSLNLFHIIKMAPESNQDNQQSHNQTPQKHLLNRAQYLISISHNLEP 83
P P ++ S F+L+ H P S+ +NQ S++ P+ LL+ Q+L+ + L+P
Sbjct: 27 PKLPGRRPAHSRTFNLSYSH-----PSSSDNNQSSYHSLPKMSLLDPRQFLLPAFY-LDP 80
Query: 82 TNHKI 68
T +
Sbjct: 81 TTQAL 85
>sp|Q9MLJ8|CYB_BUNFA Cytochrome b
Length = 370
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Frame = -2
Query: 466 PKHQY--------MINHPQLTSQLTPISKNGPTAAPQMNPFANWQSAKISWKSYFLSLFG 311
P H Y MI +T TP N P + NP Q K W YFL +G
Sbjct: 214 PYHSYKDMLMITIMITMLFITMSFTPNLLNDPENFSKANPLLTPQHIKPEW--YFLFAYG 271
Query: 310 VGRKYPIPPTSTMA 269
+ R P TMA
Sbjct: 272 ILRSIPNKLGGTMA 285
>sp|Q9VP04|ORMDL_DROME ORM1-like protein (dORMDL)
Length = 154
Score = 30.0 bits (66), Expect = 3.8
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Frame = -2
Query: 382 QMNPFANWQSAKISWKSYFLSLFGVGRKY------PIPPTSTMAAFPHNPDKK*DFSIDF 221
+ NP ++W SA+ W +Y L L V + IP T HN
Sbjct: 10 EANPNSSWLSARGFWLAYLLGLLSVHLLFLSVPFVSIPWAWTATNLLHNA---------A 60
Query: 220 SLNLFHIIKMAPESNQDNQQSHNQT 146
L H+IK AP + +N S T
Sbjct: 61 HLYFLHVIKGAPWLSTENDPSRRWT 85
>sp|Q8EPQ5|RUVA_OCEIH Holliday junction DNA helicase ruvA
Length = 201
Score = 30.0 bits (66), Expect = 3.8
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 246 LSGLCGKAAIVDVGGIGYFLPTPNKDKKYDFQEIL 350
L+ L ++ IVDVGGIGY + PN + FQ++L
Sbjct: 9 LNSLGDESLIVDVGGIGYEIVCPN---PFVFQDLL 40
>sp|P20607|IL6_RAT Interleukin-6 precursor (IL-6)
Length = 211
Score = 29.6 bits (65), Expect = 4.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 449 DKSSPTNLAINPNLKKRTNCSST--NESVC*LAICQNFLEIIFFI-FVRS 309
D S NL + P +++ C T N+ +C L IC LE F++ FV++
Sbjct: 81 DALSENNLKL-PEIQRNDGCFQTGYNQEICLLKICSGLLEFRFYLEFVKN 129
>sp|Q8FY05|PPCK_BRUSU Phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase)
(Phosphoenolpyruvate carboxylase) (PEPCK)
Length = 536
Score = 29.6 bits (65), Expect = 4.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 67 KFYDLLVPDYEKLRSNIEHDLKDA 138
K D+ V ++EK S+++H++KDA
Sbjct: 504 KLVDMFVSNFEKFESHVDHEVKDA 527
>sp|Q981H7|ALR3_RHILO Alanine racemase 3
Length = 388
Score = 29.6 bits (65), Expect = 4.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 175 DLTQEPFLLCGKGSN*NLLKNLISYQDY---VGKQPLLMLEELGIFC 306
D+T P LCG G+N LL + + D G P +L LG+ C
Sbjct: 310 DVTDVPEALCGPGTNVELLSDDFTVDDLAASAGVHPQEVLTRLGVGC 356
>sp|Q8YE41|PPCK_BRUME Phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase)
(Phosphoenolpyruvate carboxylase) (PEPCK)
Length = 536
Score = 29.6 bits (65), Expect = 4.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 67 KFYDLLVPDYEKLRSNIEHDLKDA 138
K D+ V ++EK S+++H++KDA
Sbjct: 504 KLVDMFVSNFEKFESHVDHEVKDA 527
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,068,455
Number of Sequences: 369166
Number of extensions: 1402916
Number of successful extensions: 3895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3894
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)