Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_020_F21 (542 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q81N41|SYH1_BACAN Histidyl-tRNA synthetase 1 (Histidine-... 36 0.053 sp|Q01360|AMIE_RHOER Aliphatic amidase (Acylamide amidohydr... 33 0.58 sp|Q22909|HM30_CAEEL Homeobox protein ceh-30 31 2.2 sp|Q9MLJ8|CYB_BUNFA Cytochrome b 31 2.2 sp|Q9VP04|ORMDL_DROME ORM1-like protein (dORMDL) 30 3.8 sp|Q8EPQ5|RUVA_OCEIH Holliday junction DNA helicase ruvA 30 3.8 sp|P20607|IL6_RAT Interleukin-6 precursor (IL-6) 30 4.9 sp|Q8FY05|PPCK_BRUSU Phosphoenolpyruvate carboxykinase [ATP... 30 4.9 sp|Q981H7|ALR3_RHILO Alanine racemase 3 30 4.9 sp|Q8YE41|PPCK_BRUME Phosphoenolpyruvate carboxykinase [ATP... 30 4.9
>sp|Q81N41|SYH1_BACAN Histidyl-tRNA synthetase 1 (Histidine--tRNA ligase 1) (HisRS 1) Length = 425 Score = 36.2 bits (82), Expect = 0.053 Identities = 21/72 (29%), Positives = 37/72 (51%) Frame = +1 Query: 85 VPDYEKLRSNIEHDLKDAFEVFDCEIVDCPDLTQEPFLLCGKGSN*NLLKNLISYQDYVG 264 +P+ + LRS I+ +D FE + C+ ++ P L + G +LK + + QD G Sbjct: 13 LPEEQVLRSKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ-G 71 Query: 265 KQPLLMLEELGI 300 K+ L + +L I Sbjct: 72 KRDLALRYDLTI 83
>sp|Q01360|AMIE_RHOER Aliphatic amidase (Acylamide amidohydrolase) (Wide spectrum amidase) Length = 345 Score = 32.7 bits (73), Expect = 0.58 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 61 PFKFYDLLVPDYEKLRSNIEHDLKDAFEVFDCEIVDCP 174 PF+FY L V D +K + +E +D V DC + + P Sbjct: 301 PFEFYKLWVTDAQKAQERVEAITRDTVGVADCRVGNLP 338
>sp|Q22909|HM30_CAEEL Homeobox protein ceh-30 Length = 299 Score = 30.8 bits (68), Expect = 2.2 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = -2 Query: 262 PHNPDKK*DFSIDFSLNLFHIIKMAPESNQDNQQSHNQTPQKHLLNRAQYLISISHNLEP 83 P P ++ S F+L+ H P S+ +NQ S++ P+ LL+ Q+L+ + L+P Sbjct: 27 PKLPGRRPAHSRTFNLSYSH-----PSSSDNNQSSYHSLPKMSLLDPRQFLLPAFY-LDP 80 Query: 82 TNHKI 68 T + Sbjct: 81 TTQAL 85
>sp|Q9MLJ8|CYB_BUNFA Cytochrome b Length = 370 Score = 30.8 bits (68), Expect = 2.2 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 8/74 (10%) Frame = -2 Query: 466 PKHQY--------MINHPQLTSQLTPISKNGPTAAPQMNPFANWQSAKISWKSYFLSLFG 311 P H Y MI +T TP N P + NP Q K W YFL +G Sbjct: 214 PYHSYKDMLMITIMITMLFITMSFTPNLLNDPENFSKANPLLTPQHIKPEW--YFLFAYG 271 Query: 310 VGRKYPIPPTSTMA 269 + R P TMA Sbjct: 272 ILRSIPNKLGGTMA 285
>sp|Q9VP04|ORMDL_DROME ORM1-like protein (dORMDL) Length = 154 Score = 30.0 bits (66), Expect = 3.8 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Frame = -2 Query: 382 QMNPFANWQSAKISWKSYFLSLFGVGRKY------PIPPTSTMAAFPHNPDKK*DFSIDF 221 + NP ++W SA+ W +Y L L V + IP T HN Sbjct: 10 EANPNSSWLSARGFWLAYLLGLLSVHLLFLSVPFVSIPWAWTATNLLHNA---------A 60 Query: 220 SLNLFHIIKMAPESNQDNQQSHNQT 146 L H+IK AP + +N S T Sbjct: 61 HLYFLHVIKGAPWLSTENDPSRRWT 85
>sp|Q8EPQ5|RUVA_OCEIH Holliday junction DNA helicase ruvA Length = 201 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = +3 Query: 246 LSGLCGKAAIVDVGGIGYFLPTPNKDKKYDFQEIL 350 L+ L ++ IVDVGGIGY + PN + FQ++L Sbjct: 9 LNSLGDESLIVDVGGIGYEIVCPN---PFVFQDLL 40
>sp|P20607|IL6_RAT Interleukin-6 precursor (IL-6) Length = 211 Score = 29.6 bits (65), Expect = 4.9 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -1 Query: 449 DKSSPTNLAINPNLKKRTNCSST--NESVC*LAICQNFLEIIFFI-FVRS 309 D S NL + P +++ C T N+ +C L IC LE F++ FV++ Sbjct: 81 DALSENNLKL-PEIQRNDGCFQTGYNQEICLLKICSGLLEFRFYLEFVKN 129
>sp|Q8FY05|PPCK_BRUSU Phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 536 Score = 29.6 bits (65), Expect = 4.9 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = +1 Query: 67 KFYDLLVPDYEKLRSNIEHDLKDA 138 K D+ V ++EK S+++H++KDA Sbjct: 504 KLVDMFVSNFEKFESHVDHEVKDA 527
>sp|Q981H7|ALR3_RHILO Alanine racemase 3 Length = 388 Score = 29.6 bits (65), Expect = 4.9 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +1 Query: 175 DLTQEPFLLCGKGSN*NLLKNLISYQDY---VGKQPLLMLEELGIFC 306 D+T P LCG G+N LL + + D G P +L LG+ C Sbjct: 310 DVTDVPEALCGPGTNVELLSDDFTVDDLAASAGVHPQEVLTRLGVGC 356
>sp|Q8YE41|PPCK_BRUME Phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 536 Score = 29.6 bits (65), Expect = 4.9 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = +1 Query: 67 KFYDLLVPDYEKLRSNIEHDLKDA 138 K D+ V ++EK S+++H++KDA Sbjct: 504 KLVDMFVSNFEKFESHVDHEVKDA 527
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,068,455 Number of Sequences: 369166 Number of extensions: 1402916 Number of successful extensions: 3895 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3795 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3894 length of database: 68,354,980 effective HSP length: 104 effective length of database: 49,142,540 effective search space used: 3734833040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)