Planaria EST Database


DrC_02444

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02444
         (869 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y4K3|TRAF6_HUMAN  TNF receptor-associated factor 6 (Int...    47   9e-05
sp|P70196|TRAF6_MOUSE  TNF receptor-associated factor 6            46   1e-04
sp|Q60803|TRAF3_MOUSE  TNF receptor-associated factor 3 (CD4...    45   3e-04
sp|P39429|TRAF2_MOUSE  TNF receptor-associated factor 2            44   4e-04
sp|P70191|TRAF5_MOUSE  TNF receptor-associated factor 5            44   6e-04
sp|Q12933|TRAF2_HUMAN  TNF receptor-associated factor 2 (Tum...    41   0.005
sp|O00463|TRAF5_HUMAN  TNF receptor-associated factor 5 (RIN...    41   0.005
sp|Q02084|A33_PLEWA  Zinc-binding protein A33                      41   0.005
sp|Q13114|TRAF3_HUMAN  TNF receptor-associated factor 3 (CD4...    40   0.011
sp|Q99PQ1|TRI12_MOUSE  Tripartite motif protein 12                 39   0.014
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 (Interleukin 1 signal transducer)
           (RING finger protein 85)
          Length = 522

 Score = 46.6 bits (109), Expect = 9e-05
 Identities = 30/122 (24%), Positives = 52/122 (42%)
 Frame = +1

Query: 454 TSEMSSSKFKPMFNFISQYKNVINKNVPDNLKCGKCRNILINAYCLPCGCSYCGDCVNEM 633
           T  +SSS  +     I  Y    +  +    +C  C   L  A   PCG  +C  C+ + 
Sbjct: 42  TGNLSSSFMEE----IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKS 97

Query: 634 LENGVVNCPGEAEDCKEELISNSHLDCKTNRAISNVVIKCPEAMCLFECAIINMEEHMRV 813
           + +    CP + E   E  +   +      R I ++++KCP   CL +  + ++E+H   
Sbjct: 98  IRDAGHKCPVDNEILLENQLFPDNF---AKREILSLMVKCPNEGCLHKMELRHLEDHQAH 154

Query: 814 CE 819
           CE
Sbjct: 155 CE 156
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6
          Length = 530

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 1/129 (0%)
 Frame = +1

Query: 454 TSEMSSSKFKPMFNFISQYKNVINKNVPDNLKCGKCRNILINAYCLPCGCSYCGDCVNEM 633
           T  +SSS  +     I  Y    +  +    +C  C   L  A   PCG  +C  C+ + 
Sbjct: 42  TGNLSSSFMEE----IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKS 97

Query: 634 LENGVVNCPGEAEDCKEELISNSHLDCKTNRAISNVVIKCPEAMCLFECAIINMEEHMRV 813
           + +    CP + E   E  +   +      R I ++ +KCP   CL +  + ++E+H   
Sbjct: 98  IRDAGHKCPVDNEILLENQLFPDNF---AKREILSLTVKCPNKGCLQKMELRHLEDHQVH 154

Query: 814 CE-KNVKCP 837
           CE   V CP
Sbjct: 155 CEFALVNCP 163
>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 (CD40 receptor associated factor
           1) (CRAF1) (TRAFAMN)
          Length = 567

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 3/119 (2%)
 Frame = +1

Query: 508 YKNVINKNVPDNLKCGKCRNILINAYCLPCGCSYCGDCVNEMLENGVVNCPGEAEDCKEE 687
           YK    K V D  KC KCR +L N     CG  +C  C+  +L +    C      C+E 
Sbjct: 38  YKEKFVKTVEDKYKCEKCRLVLCNPKQTECGHRFCESCMAALLSSSSPKCTA----CQES 93

Query: 688 LISNSHLD---CKTNRAISNVVIKCPEAMCLFECAIINMEEHMRVCEKNVKCPFDNLGC 855
           +I +       CK       V  +     C  +  +     H+ V  KN +C F+ L C
Sbjct: 94  IIKDKVFKDNCCKREILALQVYCRNEGRGCAEQLTL----GHLLVHLKN-ECQFEELPC 147
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2
          Length = 501

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
 Frame = +1

Query: 451 ITSEMSSSKFKPMFNFISQYKNVINKNVPDNLKCGKCRNILINAYCLPCGCSYCGDCVNE 630
           +TS  S    +P F+     K ++   +     C  C+NIL   +   CG  YC  C+  
Sbjct: 6   VTSPGSLELLQPGFS-----KTLLGTRLEAKYLCSACKNILRRPFQAQCGHRYCSFCLTS 60

Query: 631 MLENGVVNCPG-EAEDCKEELI-----SNSHLDCKTNRAISNVVIKCPEAMCLFECAIIN 792
           +L +G  NC     E   EE I     S++  D    R + ++   CP   C ++  +  
Sbjct: 61  ILSSGPQNCAACVYEGLYEEGISILESSSAFPDNAARREVESLPAVCPNDGCTWKGTLKE 120

Query: 793 MEEHMRVCEKNVKCPF 840
            E     C + + CPF
Sbjct: 121 YES----CHEGL-CPF 131
>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5
          Length = 558

 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
 Frame = +1

Query: 526 KNVPDNLKCGKCRNILINAYCLPCGCSYCGDCVNEMLE-NGVVNCPGEAEDCKEELISNS 702
           + + +  KC  C ++L N +   CG  +C  C+  + E N V  CP + E  K + +   
Sbjct: 37  EQLEERYKCAFCHSVLHNPHQTGCGHRFCQQCIRSLRELNSVPICPVDKEVIKPQEVFKD 96

Query: 703 HLDCKTNRAISNVVIKCPEAM-CLFECAIINMEEHMRVCE-KNVKCP 837
           +  CK  R + N+ + C  A  C     +   ++H++ C  + V CP
Sbjct: 97  NC-CK--REVLNLHVYCKNAPGCNARIILGRFQDHLQHCSFQAVPCP 140
>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 (Tumor necrosis factor type 2
           receptor-associated protein 3)
          Length = 501

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
 Frame = +1

Query: 511 KNVINKNVPDNLKCGKCRNILINAYCLPCGCSYCGDCVNEMLENGVVNCPG-EAEDCKEE 687
           K ++   +     C  CRN+L   +   CG  YC  C+  +L +G  NC     E   EE
Sbjct: 21  KTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80

Query: 688 LI-----SNSHLDCKTNRAISNVVIKCPEAMCLFECAIINMEEHMRVCEKNVKCP 837
            I     S++  D    R + ++   CP   C ++  +   E     C +  +CP
Sbjct: 81  GISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKEYES----CHEG-RCP 130
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RING finger protein 84)
          Length = 557

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
 Frame = +1

Query: 526 KNVPDNLKCGKCRNILINAYCLPCGCSYCGDCVNEMLE-NGVVNCPGEAEDCKEELISNS 702
           + + +  KC  C ++L N +   CG  +C  C+  + E N V  CP + E  K + +   
Sbjct: 37  ERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKD 96

Query: 703 HLDCKTNRAISNVVIKCPEAM-CLFECAIINMEEHMRVC 816
           +  CK  R + N+ + C  A  C  +  +   ++H++ C
Sbjct: 97  NC-CK--REVLNLYVYCSNAPGCNAKVILGRYQDHLQQC 132
>sp|Q02084|A33_PLEWA Zinc-binding protein A33
          Length = 624

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 538 DNLKCGKCRNILINAYCLPCGCSYCGDCVNEMLEN-GVVNCPGEAEDCKEELISNSHLDC 714
           ++L C  CR++      L CG ++C  C+++  E+    +CP    +CKE L    +   
Sbjct: 158 EDLTCPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCP----ECKEVLTERKY--- 210

Query: 715 KTNRAISNVVIK 750
            TNR ++N+V K
Sbjct: 211 TTNRVLANLVKK 222
>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 (CD40 receptor associated factor
           1) (CRAF1) (CD40 binding protein) (CD40BP) (LMP1
           associated protein) (LAP1) (CAP-1)
          Length = 568

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
 Frame = +1

Query: 508 YKNVINKNVPDNLKCGKCRNILINAYCLPCGCSYCGDCVNEMLENGVVNCPGEAEDCKEE 687
           YK    K V D  KC KC  +L +     CG  +C  C+  +L +    C      C+E 
Sbjct: 39  YKEKFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTA----CQES 94

Query: 688 LISNS-HLDCKTNRAISNVVIKCPEAMCLFECAIINMEEHMRVCEKNVKCPFDNLGC 855
           ++ +    D    R I  + I C        CA      H+ V  KN  C F+ L C
Sbjct: 95  IVKDKVFKDNCCKREILALQIYCRNES--RGCAEQLTLGHLLVHLKN-DCHFEELPC 148
>sp|Q99PQ1|TRI12_MOUSE Tripartite motif protein 12
          Length = 284

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +1

Query: 526 KNVPDNLKCGKCRNILINAYCLPCGCSYCGDCVNEMLENGVVNCPGEAEDCKEELISNSH 705
           KN+ + + C  C N+++      CG ++C  C+    E+  + C  +   C    IS   
Sbjct: 7   KNLKEEVTCPVCLNLMVKPVSADCGHTFCQGCITLYFES--IKCDKKVFICPVCRISYQF 64

Query: 706 LDCKTNRAISNVV 744
            + + NR ++N+V
Sbjct: 65  SNLRPNRNVANIV 77
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,753,273
Number of Sequences: 369166
Number of extensions: 1373836
Number of successful extensions: 3454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3447
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)