Planaria EST Database


DrC_02440

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02440
         (642 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43497|CAC1G_HUMAN  Voltage-dependent T-type calcium chan...    39   0.009
sp|Q12799|TC10_HUMAN  T-complex protein 10A homolog                39   0.015
sp|Q9NQU5|PAK6_HUMAN  Serine/threonine-protein kinase PAK 6 ...    37   0.033
sp|P17143|J1L_HCMVA  Hypothetical protein J1L                      37   0.056
sp|Q08865|H12_VOLCA  Histone H1-II                                 37   0.056
sp|Q10407|MKH1_SCHPO  MAP kinase kinase kinase mkh1                36   0.074
sp|Q5PSV9|MDC1_MOUSE  Mediator of DNA damage checkpoint prot...    36   0.074
sp|Q80VW5|WHRN_MOUSE  Whirlin                                      35   0.16 
sp|P54258|ATN1_RAT  Atrophin-1 (Dentatorubral-pallidoluysian...    35   0.16 
sp|Q8CJQ8|IF2_STRCO  Translation initiation factor IF-2            35   0.16 
>sp|O43497|CAC1G_HUMAN Voltage-dependent T-type calcium channel alpha-1G subunit
            (Voltage-gated calcium channel alpha subunit Cav3.1)
            (Cav3.1c) (NBR13)
          Length = 2377

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 4/142 (2%)
 Frame = +1

Query: 124  GDKTKMASRTAVIGGAAGGGNTARKPMNTVPVAPKLATSQRANMKKEKFEAMQLATAATN 303
            GD  K  S       +  G    +K +  V +       +   ++K     + + TAAT 
Sbjct: 994  GDANKSESEPDFFSPSLDGDGDRKKCLALVSLG------EHPELRKSLLPPLIIHTAATP 1047

Query: 304  VMSLDRQA----GQPRPPASTRTALPRSATVGRVPNRKPPPPGRANPDARKETAQDKPTG 471
             MSL +      G+   PAS RT+   SA  G     K PP  R++P +    A    + 
Sbjct: 1048 -MSLPKSTSTGLGEALGPASRRTSSSGSAEPGAAHEMKSPPSARSSPHSPWSAASSWTSR 1106

Query: 472  RVPQSTSARAAGLPRSANTNSR 537
            R  +++  RA  L R + +  R
Sbjct: 1107 RSSRNSLGRAPSLKRRSPSGER 1128
>sp|Q12799|TC10_HUMAN T-complex protein 10A homolog
          Length = 416

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
 Frame = +1

Query: 223 PKLA--TSQRANMKKEKFEAMQLATAATNVMSLDRQAGQPRPPASTRTALPRSATVGRVP 396
           PK A   SQ A +  +++ +  LA      +  +R      PP   R   P     GR  
Sbjct: 140 PKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKTPPQEDREKSPP----GRRQ 195

Query: 397 NRKPPPPGRANPDA-RKETAQD----KPTGRVPQSTSARAAGLPRSANT 528
           +R P P GR  P A R+E ++D     P+ R PQ++  R + +  S  T
Sbjct: 196 DRSPAPTGRPTPGAERREVSEDGKIMHPSSRSPQNSGGRKSPVQASQAT 244
>sp|Q9NQU5|PAK6_HUMAN Serine/threonine-protein kinase PAK 6 (p21-activated kinase 6)
           (PAK-6) (PAK-5)
          Length = 681

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 11/141 (7%)
 Frame = +1

Query: 181 GNTARKPMNTVPVAPKLATSQRANMKKEKFEAMQLATAATNVMSLDRQAGQPRPPASTRT 360
           G+   +P      +PK   ++ +++K+  F +M L+TAAT             PP+S++ 
Sbjct: 235 GSATGRPGGEGSPSPK---TRESSLKRRLFRSMFLSTAAT------------APPSSSKP 279

Query: 361 ALPRSATVGRVPNRKPPPPGRANPDARKETAQ----DKPTGRVPQSTSARAAGLPRSANT 528
             P  +     PN    PP + NP +    AQ    D+P G     T++  +   +S  T
Sbjct: 280 GPPPQSK----PNSSFRPPQKDNPPSLVAKAQSLPSDQPVGTFSPLTTSDTSSPQKSLRT 335

Query: 529 -------NSRSAPKHQPVAWN 570
                    RS+P   P  W+
Sbjct: 336 APATGQLPGRSSPAGSPRTWH 356
>sp|P17143|J1L_HCMVA Hypothetical protein J1L
          Length = 309

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = +1

Query: 304 VMSLDRQAGQPRP----PASTRTALPRSATVGRVPNRKPPPPGRANPDARKETAQDK-PT 468
           V SL R A  PRP    P + RTA   +      P     PP  A P  R+   + K P 
Sbjct: 4   VGSLVRAANCPRPQRNLPYAARTAPAPAQPPSPAPTPSRTPPVSATPRHRRRPERSKTPD 63

Query: 469 GRVPQSTSARAAGLPRSANTNSRSAPKHQPVA 564
            R  ++T AR           + SAPKH+P A
Sbjct: 64  KRSAETTQARTV-------ERTGSAPKHRPEA 88
>sp|Q08865|H12_VOLCA Histone H1-II
          Length = 241

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
 Frame = +1

Query: 226 KLATSQRANMKKE-KFEAMQLATAATNVMSLDRQAGQPRPPASTRTALPRSATVGRVPNR 402
           KL+ +Q++  K   K +A     AA    +  ++A  P+     +   P+S      P  
Sbjct: 92  KLSDAQKSKAKAAAKPKAAPKKAAAPKKAAAPKKAKAPKKEGEKKAVKPKSEKKAAKPKT 151

Query: 403 KPPPPGRANPDARKETAQDKPTGRVPQSTSARAAGLPRSANTNSRSAPKHQPVA 564
           +  P     P A K+ A  KP  + P   +A+ A   ++A     +APK    A
Sbjct: 152 EKKPKAAKKPKAAKKPAAKKPAAKKP---AAKKATPKKAAAPKKAAAPKKAKAA 202
>sp|Q10407|MKH1_SCHPO MAP kinase kinase kinase mkh1
          Length = 1116

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +1

Query: 217 VAPKLATSQRANMKKEKFEAMQLATAATNVMSLDRQAGQPRPPASTRTA--LPRSATVGR 390
           +A K+  +  A  +K KF   +     T  M L+  +  P+ P+S  +A  L R+    R
Sbjct: 482 MATKILDATEAQSEKNKFTVCRPHKKVTLKMPLNSGSSAPQSPSSNTSASVLTRNFVAHR 541

Query: 391 VPNRKPPPPGRANPDARKETAQDKPTGRVPQST 489
            P   PPPP   +   RK T   +P+ R  +S+
Sbjct: 542 DP---PPPPTETSSLRRKNTLTRRPSIRHARSS 571
>sp|Q5PSV9|MDC1_MOUSE Mediator of DNA damage checkpoint protein 1
          Length = 1707

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
 Frame = +1

Query: 214  PVAPKLATSQRANMKKEKFEAMQLATAATNVMSLDRQAGQPRPPASTRTALPRSATVGRV 393
            PV PKL TSQ    + +  E +       +  S ++     R P +TR    +S      
Sbjct: 1076 PVIPKL-TSQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPRATRGRPSKS------ 1128

Query: 394  PNRKPPPPGRANPDARKETAQDKPTGRVPQSTSARAAGLPRSANTNS-----RSAPKHQP 558
            PN+ P P     P+ +  T+ ++P   +P+ TS    G PR ++  +      + P+ QP
Sbjct: 1129 PNKTPEPLISTGPELQPPTSIEQPV--IPKPTSRVTRGRPRKSSVRTPESVVSTGPELQP 1186

Query: 559  V 561
            +
Sbjct: 1187 L 1187
>sp|Q80VW5|WHRN_MOUSE Whirlin
          Length = 906

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 316 DRQAGQPRPPA----STRTALPRSATVGRVPNRKPPPPGRANPDARKETAQDKPTGRVPQ 483
           DR  GQPR P     +  ++   S  V   P  + PPPG A P     +AQD P+  +  
Sbjct: 594 DRLLGQPRKPGREDPAPLSSAAHSGIVFSAPRNRSPPPGTA-PTPGPSSAQDSPSSPIYA 652

Query: 484 STS 492
           S S
Sbjct: 653 SIS 655
>sp|P54258|ATN1_RAT Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)
          Length = 1183

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 28/97 (28%), Positives = 39/97 (40%)
 Frame = +1

Query: 337 RPPASTRTALPRSATVGRVPNRKPPPPGRANPDARKETAQDKPTGRVPQSTSARAAGLPR 516
           +PP  T+ +LP  A   + P   PPP GR  P+         PTG   QST+   A    
Sbjct: 421 QPPKYTQPSLPSQAVWSQGPPPPPPPYGRLLPNNNTHPGPFPPTG--GQSTAHPPAPAHH 478

Query: 517 SANTNSRSAPKHQPVAWNY*DSMLXXXXXGLLPPNKY 627
                 +  P+ QP   ++ +S       G  PP  Y
Sbjct: 479 HHQQQQQPQPQPQPQQHHHGNS-------GPPPPGAY 508
>sp|Q8CJQ8|IF2_STRCO Translation initiation factor IF-2
          Length = 1033

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
 Frame = +1

Query: 175 GGGNTARKPMNTVPVAPKLATSQRANMKKEKFEAMQLATAATNVMSLDRQAGQPRPPAST 354
           GGGN         P APK A  + +     +    Q A AA +  +  R +  P+ PA+ 
Sbjct: 53  GGGNGRSAGR---PAAPKKAAPRPSAPSPAQAGPSQAAPAAGDRAAAPRPSAAPKAPAAQ 109

Query: 355 RTALPR----SATVGRVPNRKPPPPGRANPDARKETAQDKPTGRVPQSTSARAAGLPRSA 522
           + A P     + + G  P   P P  R  P A + TA   P      ST A A   P+  
Sbjct: 110 QPAAPSAPAPAPSQGPRPTPGPKPAPRPAPAAPEFTA--PPAAPAAPSTPAPAPSGPKPG 167

Query: 523 NTNSRSAPK 549
                 APK
Sbjct: 168 GARP-GAPK 175
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.317    0.128    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,303,920
Number of Sequences: 369166
Number of extensions: 1657242
Number of successful extensions: 8125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7899
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)