Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_02439 (482 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P31916|MAT2_EUGGR Maturase-like protein 2 31 1.3 sp|P16606|NCAP_MAGV Nucleocapsid protein (Nucleoprotein) 29 6.5 sp|Q8NGA1|OR1M1_HUMAN Olfactory receptor 1M1 (Olfactory rec... 29 6.5
>sp|P31916|MAT2_EUGGR Maturase-like protein 2 Length = 758 Score = 31.2 bits (69), Expect = 1.3 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 9/105 (8%) Frame = +1 Query: 124 KCFNV**FYEYD*YMNMYSRSSVH*HNIYYRNFRTIS------RGF*HHELPGDLYSE-- 279 +CFN F++ + Y N Y + + N Y +FR + H LP +L + Sbjct: 453 RCFN---FFKKNCYPNFYKKKNFSFFNFYTESFRILKFFDAFFINTHHFFLPVELITSTK 509 Query: 280 -ATYMKFTKFIIDFLKFQKYNIQKLVSLHLFKHYFRTSFEQCDFN 411 + K+T + DF QK +I L F + S D N Sbjct: 510 LVNFQKYTMYSFDFYN-QKLSILLKDILENFNQFLSCSLVSIDLN 553
>sp|P16606|NCAP_MAGV Nucleocapsid protein (Nucleoprotein) Length = 233 Score = 28.9 bits (63), Expect = 6.5 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = -3 Query: 240 TATYSPKITVIYVMLMHTASTIHIHVSIIFIKLLHIKT 127 ++T+ P+I + +HT + H+ +++IK IKT Sbjct: 14 SSTFDPEIAYVNFKRIHTTGLSYDHIRVLYIKGREIKT 51
>sp|Q8NGA1|OR1M1_HUMAN Olfactory receptor 1M1 (Olfactory receptor 19-6) (OR19-6) Length = 313 Score = 28.9 bits (63), Expect = 6.5 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 90 PDYKFEMNFSTIDFCLNTNSKQPVLICL 7 P Y F N S +DFCL TN+ +L+ L Sbjct: 58 PMYFFLANLSLVDFCLATNTIPKMLVSL 85
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,157,180 Number of Sequences: 369166 Number of extensions: 759805 Number of successful extensions: 1279 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1279 length of database: 68,354,980 effective HSP length: 102 effective length of database: 49,512,010 effective search space used: 2871696580 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)