Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_D06
(482 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31916|MAT2_EUGGR Maturase-like protein 2 31 1.3
sp|P16606|NCAP_MAGV Nucleocapsid protein (Nucleoprotein) 29 6.5
sp|Q8NGA1|OR1M1_HUMAN Olfactory receptor 1M1 (Olfactory rec... 29 6.5
>sp|P31916|MAT2_EUGGR Maturase-like protein 2
Length = 758
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Frame = +1
Query: 124 KCFNV**FYEYD*YMNMYSRSSVH*HNIYYRNFRTIS------RGF*HHELPGDLYSE-- 279
+CFN F++ + Y N Y + + N Y +FR + H LP +L +
Sbjct: 453 RCFN---FFKKNCYPNFYKKKNFSFFNFYTESFRILKFFDAFFINTHHFFLPVELITSTK 509
Query: 280 -ATYMKFTKFIIDFLKFQKYNIQKLVSLHLFKHYFRTSFEQCDFN 411
+ K+T + DF QK +I L F + S D N
Sbjct: 510 LVNFQKYTMYSFDFYN-QKLSILLKDILENFNQFLSCSLVSIDLN 553
>sp|P16606|NCAP_MAGV Nucleocapsid protein (Nucleoprotein)
Length = 233
Score = 28.9 bits (63), Expect = 6.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 240 TATYSPKITVIYVMLMHTASTIHIHVSIIFIKLLHIKT 127
++T+ P+I + +HT + H+ +++IK IKT
Sbjct: 14 SSTFDPEIAYVNFKRIHTTGLSYDHIRVLYIKGREIKT 51
>sp|Q8NGA1|OR1M1_HUMAN Olfactory receptor 1M1 (Olfactory receptor 19-6) (OR19-6)
Length = 313
Score = 28.9 bits (63), Expect = 6.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 90 PDYKFEMNFSTIDFCLNTNSKQPVLICL 7
P Y F N S +DFCL TN+ +L+ L
Sbjct: 58 PMYFFLANLSLVDFCLATNTIPKMLVSL 85
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,157,180
Number of Sequences: 369166
Number of extensions: 759805
Number of successful extensions: 1279
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)