Planaria EST Database


DrC_02437

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02437
         (260 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CZW5|TOM70_MOUSE  Mitochondrial precursor proteins impo...    44   1e-04
sp|O94826|TOM70_HUMAN  Mitochondrial precursor proteins impo...    44   1e-04
sp|O14217|TOM70_SCHPO  Probable mitochondrial import recepto...    39   0.005
sp|Q8N0Z6|TTC5_HUMAN  Tetratricopeptide repeat protein 5 (TP...    38   0.006
sp|P54493|YQGP_BACSU  Hypothetical protein yqgP                    34   0.090
sp|Q9M8Y0|SEC_ARATH  Probable UDP-N-acetylglucosamine--pepti...    33   0.20 
sp|P46822|KLC_CAEEL  Kinesin light chain (KLC)                     33   0.20 
sp|Q60864|STIP1_MOUSE  Stress-induced-phosphoprotein 1 (STI1...    33   0.26 
sp|O35814|STIP1_RAT  Stress-induced-phosphoprotein 1 (STI1) ...    33   0.26 
sp|O18158|OGT1_CAEEL  UDP-N-acetylglucosamine--peptide N-ace...    33   0.26 
>sp|Q9CZW5|TOM70_MOUSE Mitochondrial precursor proteins import receptor (Translocase of
           outer membrane TOM70)
          Length = 611

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 38/55 (69%)
 Frame = +1

Query: 79  LSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALELLDLAVKYARNRQEM 243
           L +  +++++ I+ D KC ++Y T+ T+ ++ G+++KA+++ + A+  A++  EM
Sbjct: 530 LDKGLELISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEM 584
>sp|O94826|TOM70_HUMAN Mitochondrial precursor proteins import receptor (Translocase of
           outer membrane TOM70)
          Length = 608

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 37/55 (67%)
 Frame = +1

Query: 79  LSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALELLDLAVKYARNRQEM 243
           L    +++++ I+ D KC ++Y T+ T+ ++ G+++KA+++ + A+  A++  EM
Sbjct: 527 LDRGLELISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEM 581
>sp|O14217|TOM70_SCHPO Probable mitochondrial import receptor subunit tom40 (Translocase
           of outer membrane 40 kDa subunit)
          Length = 625

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
 Frame = +1

Query: 34  TIMATLAMIKLS------QNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKAL 195
           TIM+ + +I  +      +  +S+A  +  + +  DP+C  +  ++A   ++ G  ++AL
Sbjct: 519 TIMSAMPLINKALAVFQWKKDISQAENLCRQALSADPECDIAIASMAQFLLQQGKAREAL 578

Query: 196 ELLDLAVKYARNRQEMRN 249
           E  + + + AR   EM N
Sbjct: 579 EYFEKSAQLARTESEMVN 596
>sp|Q8N0Z6|TTC5_HUMAN Tetratricopeptide repeat protein 5 (TPR repeat protein 5)
          Length = 440

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 19/77 (24%), Positives = 42/77 (54%)
 Frame = +1

Query: 19  QSKSGTIMATLAMIKLSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALE 198
           Q K+  +M T   + ++ +   +A ++L++ +K +P+   ++N L  V+ K GD+  A  
Sbjct: 65  QGKAQVLMLTGKALNVTPDYSPKAEELLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHT 124

Query: 199 LLDLAVKYARNRQEMRN 249
               A+ + RN+  ++N
Sbjct: 125 CFSGALTHCRNKVSLQN 141
>sp|P54493|YQGP_BACSU Hypothetical protein yqgP
          Length = 507

 Score = 34.3 bits (77), Expect = 0.090
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +1

Query: 28  SGTIMATLAMIKLSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALELLD 207
           S  ++  LA+  +   +  +A  +L   +K++PK   SY  LA ++ +  +L +A + + 
Sbjct: 423 SADLLKILAVSDIQIGEYDQAVSLLERAVKKEPKDHASYYNLALLYAEKNELAQAEKAIQ 482

Query: 208 LAVKYARNRQEMR 246
            AVK     Q  +
Sbjct: 483 TAVKLKPKEQRYK 495
>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide
           N-acetylglucosaminyltransferase SEC (Protein SECRET
           AGENT)
          Length = 977

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +1

Query: 43  ATLAMIKLSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALELLDLAVK 219
           + L  +  +Q  + EA     E ++  P  + +++ LA +F++ GDL +AL+    AVK
Sbjct: 193 SNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 251
>sp|P46822|KLC_CAEEL Kinesin light chain (KLC)
          Length = 540

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = +1

Query: 34  TIMATLAMIKLSQNKLSEARKVLNETIKEDPKC--------SYSYNTLATVFIKDGDLQK 189
           T++  LA++   QNK  EA  +LNE +    KC        + + N LA +F K G  + 
Sbjct: 249 TMLNILALVYRDQNKYKEAANLLNEALSIREKCLGESHPAVAATLNNLAVLFGKRGKFKD 308

Query: 190 ALELLDLAVK 219
           A  L   A++
Sbjct: 309 AEPLCKRALE 318
>sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 (STI1) (Hsc70/Hsp90-organizing
           protein) (Hop) (mSTI1)
          Length = 543

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 64  LSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALE 198
           LS   + +A +  +E IK DP+    Y+  +  + K GD QKA E
Sbjct: 15  LSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYE 59
>sp|O35814|STIP1_RAT Stress-induced-phosphoprotein 1 (STI1) (Hsc70/Hsp90-organizing
           protein) (Hop)
          Length = 543

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 64  LSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALE 198
           LS   + +A +  +E IK DP+    Y+  +  + K GD QKA E
Sbjct: 15  LSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYE 59
>sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
           (O-GlcNAc) (OGT)
          Length = 1151

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +1

Query: 10  LVTQSKSGTI--MATLAMIKLSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDL 183
           LV QS    +  +  L+ I      L ++ +     IK + +C+ +Y+ L   + + G L
Sbjct: 150 LVFQSDPNNLPTLLLLSAINFQTKNLEKSMQYSMLAIKVNNQCAEAYSNLGNYYKEKGQL 209

Query: 184 QKALELLDLAVK 219
           Q ALE   LAVK
Sbjct: 210 QDALENYKLAVK 221
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.315    0.129    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,729,641
Number of Sequences: 369166
Number of extensions: 389882
Number of successful extensions: 1508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)