Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_C22
(260 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CZW5|TOM70_MOUSE Mitochondrial precursor proteins impo... 44 1e-04
sp|O94826|TOM70_HUMAN Mitochondrial precursor proteins impo... 44 1e-04
sp|O14217|TOM70_SCHPO Probable mitochondrial import recepto... 39 0.005
sp|Q8N0Z6|TTC5_HUMAN Tetratricopeptide repeat protein 5 (TP... 38 0.006
sp|P54493|YQGP_BACSU Hypothetical protein yqgP 34 0.090
sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--pepti... 33 0.20
sp|P46822|KLC_CAEEL Kinesin light chain (KLC) 33 0.20
sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 (STI1... 33 0.26
sp|O35814|STIP1_RAT Stress-induced-phosphoprotein 1 (STI1) ... 33 0.26
sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-ace... 33 0.26
>sp|Q9CZW5|TOM70_MOUSE Mitochondrial precursor proteins import receptor (Translocase of
outer membrane TOM70)
Length = 611
Score = 43.9 bits (102), Expect = 1e-04
Identities = 15/55 (27%), Positives = 38/55 (69%)
Frame = +1
Query: 79 LSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALELLDLAVKYARNRQEM 243
L + +++++ I+ D KC ++Y T+ T+ ++ G+++KA+++ + A+ A++ EM
Sbjct: 530 LDKGLELISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEM 584
>sp|O94826|TOM70_HUMAN Mitochondrial precursor proteins import receptor (Translocase of
outer membrane TOM70)
Length = 608
Score = 43.5 bits (101), Expect = 1e-04
Identities = 15/55 (27%), Positives = 37/55 (67%)
Frame = +1
Query: 79 LSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALELLDLAVKYARNRQEM 243
L +++++ I+ D KC ++Y T+ T+ ++ G+++KA+++ + A+ A++ EM
Sbjct: 527 LDRGLELISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEM 581
>sp|O14217|TOM70_SCHPO Probable mitochondrial import receptor subunit tom40 (Translocase
of outer membrane 40 kDa subunit)
Length = 625
Score = 38.5 bits (88), Expect = 0.005
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +1
Query: 34 TIMATLAMIKLS------QNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKAL 195
TIM+ + +I + + +S+A + + + DP+C + ++A ++ G ++AL
Sbjct: 519 TIMSAMPLINKALAVFQWKKDISQAENLCRQALSADPECDIAIASMAQFLLQQGKAREAL 578
Query: 196 ELLDLAVKYARNRQEMRN 249
E + + + AR EM N
Sbjct: 579 EYFEKSAQLARTESEMVN 596
>sp|Q8N0Z6|TTC5_HUMAN Tetratricopeptide repeat protein 5 (TPR repeat protein 5)
Length = 440
Score = 38.1 bits (87), Expect = 0.006
Identities = 19/77 (24%), Positives = 42/77 (54%)
Frame = +1
Query: 19 QSKSGTIMATLAMIKLSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALE 198
Q K+ +M T + ++ + +A ++L++ +K +P+ ++N L V+ K GD+ A
Sbjct: 65 QGKAQVLMLTGKALNVTPDYSPKAEELLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHT 124
Query: 199 LLDLAVKYARNRQEMRN 249
A+ + RN+ ++N
Sbjct: 125 CFSGALTHCRNKVSLQN 141
>sp|P54493|YQGP_BACSU Hypothetical protein yqgP
Length = 507
Score = 34.3 bits (77), Expect = 0.090
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +1
Query: 28 SGTIMATLAMIKLSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALELLD 207
S ++ LA+ + + +A +L +K++PK SY LA ++ + +L +A + +
Sbjct: 423 SADLLKILAVSDIQIGEYDQAVSLLERAVKKEPKDHASYYNLALLYAEKNELAQAEKAIQ 482
Query: 208 LAVKYARNRQEMR 246
AVK Q +
Sbjct: 483 TAVKLKPKEQRYK 495
>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SEC (Protein SECRET
AGENT)
Length = 977
Score = 33.1 bits (74), Expect = 0.20
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 43 ATLAMIKLSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALELLDLAVK 219
+ L + +Q + EA E ++ P + +++ LA +F++ GDL +AL+ AVK
Sbjct: 193 SNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 251
>sp|P46822|KLC_CAEEL Kinesin light chain (KLC)
Length = 540
Score = 33.1 bits (74), Expect = 0.20
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +1
Query: 34 TIMATLAMIKLSQNKLSEARKVLNETIKEDPKC--------SYSYNTLATVFIKDGDLQK 189
T++ LA++ QNK EA +LNE + KC + + N LA +F K G +
Sbjct: 249 TMLNILALVYRDQNKYKEAANLLNEALSIREKCLGESHPAVAATLNNLAVLFGKRGKFKD 308
Query: 190 ALELLDLAVK 219
A L A++
Sbjct: 309 AEPLCKRALE 318
>sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 (STI1) (Hsc70/Hsp90-organizing
protein) (Hop) (mSTI1)
Length = 543
Score = 32.7 bits (73), Expect = 0.26
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 64 LSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALE 198
LS + +A + +E IK DP+ Y+ + + K GD QKA E
Sbjct: 15 LSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYE 59
>sp|O35814|STIP1_RAT Stress-induced-phosphoprotein 1 (STI1) (Hsc70/Hsp90-organizing
protein) (Hop)
Length = 543
Score = 32.7 bits (73), Expect = 0.26
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 64 LSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDLQKALE 198
LS + +A + +E IK DP+ Y+ + + K GD QKA E
Sbjct: 15 LSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYE 59
>sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
(O-GlcNAc) (OGT)
Length = 1151
Score = 32.7 bits (73), Expect = 0.26
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +1
Query: 10 LVTQSKSGTI--MATLAMIKLSQNKLSEARKVLNETIKEDPKCSYSYNTLATVFIKDGDL 183
LV QS + + L+ I L ++ + IK + +C+ +Y+ L + + G L
Sbjct: 150 LVFQSDPNNLPTLLLLSAINFQTKNLEKSMQYSMLAIKVNNQCAEAYSNLGNYYKEKGQL 209
Query: 184 QKALELLDLAVK 219
Q ALE LAVK
Sbjct: 210 QDALENYKLAVK 221
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.129 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,729,641
Number of Sequences: 369166
Number of extensions: 389882
Number of successful extensions: 1508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)