Planaria EST Database


DrC_02433

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02433
         (379 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19877|RS23_CAEEL  40S ribosomal protein S23                   141   5e-34
sp|Q9GRJ3|RS23_LUMRU  40S ribosomal protein S23                   139   2e-33
sp|P62267|RS23_MOUSE  40S ribosomal protein S23 >gi|54039461...   139   3e-33
sp|Q6SA96|RS23_PIG  40S ribosomal protein S23                     139   3e-33
sp|Q90YQ1|RS23_ICTPU  40S ribosomal protein S23                   139   3e-33
sp|Q86FP7|RS23_DERVA  40S ribosomal protein S23                   139   3e-33
sp|Q8I7D5|RS23_CIOIN  40S ribosomal protein S23                   137   6e-33
sp|Q962Q7|RS23_SPOFR  40S ribosomal protein S23 >gi|52000789...   137   1e-32
sp|P90707|RS23_BRUMA  40S ribosomal protein S23                   135   2e-32
sp|Q8T3U2|RS23_DROME  40S ribosomal protein S23                   135   4e-32
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
          Length = 143

 Score =  141 bits (355), Expect = 5e-34
 Identities = 70/106 (66%), Positives = 86/106 (81%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + +H+GTR+ SN FGGAS AK  V EK+G EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28  KKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
           DGC+N +E   E++VSGFGRSG AVG+IPGVRF+  KVAN SL+ L
Sbjct: 88  DGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIAL 133
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
          Length = 143

 Score =  139 bits (351), Expect = 2e-33
 Identities = 72/106 (67%), Positives = 85/106 (80%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + SHLGTR+ SN FGGAS AK  V EKVG EA+QPNSAIRKC RV++ +NGKKITA VP 
Sbjct: 28  KKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPR 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
           DGC+N IE   E++V+GFGR G AVG+IPGVRF+  KVA+VSLL L
Sbjct: 88  DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLAL 133
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
 sp|P62298|RS23_CHILA 40S ribosomal protein S23
 sp|P62266|RS23_HUMAN 40S ribosomal protein S23
 sp|P62268|RS23_RAT 40S ribosomal protein S23
          Length = 143

 Score =  139 bits (349), Expect = 3e-33
 Identities = 71/106 (66%), Positives = 84/106 (79%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + +HLGT   +N FGGAS AK  V EKVG EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28  KKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
           DGC+N IE   E++V+GFGR G AVG+IPGVRF+  KVANVSLL L
Sbjct: 88  DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
          Length = 143

 Score =  139 bits (349), Expect = 3e-33
 Identities = 71/106 (66%), Positives = 84/106 (79%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + +HLGT   +N FGGAS AK  V EKVG EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28  KKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
           DGC+N IE   E++V+GFGR G AVG+IPGVRF+  KVANVSLL L
Sbjct: 88  DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
          Length = 143

 Score =  139 bits (349), Expect = 3e-33
 Identities = 71/106 (66%), Positives = 84/106 (79%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + +HLGT   +N FGGAS AK  V EKVG EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28  KKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
           DGC+N IE   E++V+GFGR G AVG+IPGVRF+  KVANVSLL L
Sbjct: 88  DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
          Length = 143

 Score =  139 bits (349), Expect = 3e-33
 Identities = 71/106 (66%), Positives = 85/106 (80%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + +HLGTR+ +N FGGAS AK  V EKVG EA+QPNSAIRKC RV++ +NGKKITA VP 
Sbjct: 28  KKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPR 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
           DGC+N IE   E++V+GFGR G AVG+IPGVRF+  KVANVSLL L
Sbjct: 88  DGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23
          Length = 143

 Score =  137 bits (346), Expect = 6e-33
 Identities = 70/103 (67%), Positives = 83/103 (80%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + SHLGT   +N FGGAS AK  V EK+G EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28  KKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSL 311
           DGC+N IE   E++V+GFGRSG AVG+IPGVRF+  KVANVSL
Sbjct: 88  DGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSL 130
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
 sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
          Length = 143

 Score =  137 bits (344), Expect = 1e-32
 Identities = 69/106 (65%), Positives = 85/106 (80%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + +H+GTR+ +N FGGAS AK  V EKVG EA+QPNSAIRKC RV++ +NGKK+TA VP 
Sbjct: 28  KKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
           DGC+N IE   E++V+GFGR G AVG+IPGVRF+  KVANVSLL L
Sbjct: 88  DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
          Length = 143

 Score =  135 bits (341), Expect = 2e-32
 Identities = 69/106 (65%), Positives = 84/106 (79%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + +HLGTR+ +N FG AS AK  V EKVG EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28  KKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
           DGC+N IE   E++V+GFGR G AVG+IPGVRF+  KVAN SL+ L
Sbjct: 88  DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIAL 133
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
          Length = 143

 Score =  135 bits (339), Expect = 4e-32
 Identities = 70/106 (66%), Positives = 84/106 (79%)
 Frame = +3

Query: 3   ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
           + +HLGTR+ +N FGGAS AK  V EKVG EA+QPNSAIRKC RV++ +NGKKITA VP 
Sbjct: 28  KKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPR 87

Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
           DG +N IE   E++V+GFGR G AVG+IPGVRF+  KVANVSLL L
Sbjct: 88  DGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,045,552
Number of Sequences: 369166
Number of extensions: 835436
Number of successful extensions: 2543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2523
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)