Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_C13
(379 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 141 5e-34
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 139 2e-33
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 139 3e-33
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 139 3e-33
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 139 3e-33
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 139 3e-33
sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 137 6e-33
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 137 1e-32
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 135 2e-32
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 135 4e-32
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 141 bits (355), Expect = 5e-34
Identities = 70/106 (66%), Positives = 86/106 (81%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ +H+GTR+ SN FGGAS AK V EK+G EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28 KKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
DGC+N +E E++VSGFGRSG AVG+IPGVRF+ KVAN SL+ L
Sbjct: 88 DGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIAL 133
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 139 bits (351), Expect = 2e-33
Identities = 72/106 (67%), Positives = 85/106 (80%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ SHLGTR+ SN FGGAS AK V EKVG EA+QPNSAIRKC RV++ +NGKKITA VP
Sbjct: 28 KKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPR 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
DGC+N IE E++V+GFGR G AVG+IPGVRF+ KVA+VSLL L
Sbjct: 88 DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLAL 133
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 139 bits (349), Expect = 3e-33
Identities = 71/106 (66%), Positives = 84/106 (79%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ +HLGT +N FGGAS AK V EKVG EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28 KKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
DGC+N IE E++V+GFGR G AVG+IPGVRF+ KVANVSLL L
Sbjct: 88 DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 139 bits (349), Expect = 3e-33
Identities = 71/106 (66%), Positives = 84/106 (79%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ +HLGT +N FGGAS AK V EKVG EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28 KKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
DGC+N IE E++V+GFGR G AVG+IPGVRF+ KVANVSLL L
Sbjct: 88 DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 139 bits (349), Expect = 3e-33
Identities = 71/106 (66%), Positives = 84/106 (79%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ +HLGT +N FGGAS AK V EKVG EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28 KKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
DGC+N IE E++V+GFGR G AVG+IPGVRF+ KVANVSLL L
Sbjct: 88 DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 139 bits (349), Expect = 3e-33
Identities = 71/106 (66%), Positives = 85/106 (80%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ +HLGTR+ +N FGGAS AK V EKVG EA+QPNSAIRKC RV++ +NGKKITA VP
Sbjct: 28 KKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPR 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
DGC+N IE E++V+GFGR G AVG+IPGVRF+ KVANVSLL L
Sbjct: 88 DGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23
Length = 143
Score = 137 bits (346), Expect = 6e-33
Identities = 70/103 (67%), Positives = 83/103 (80%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ SHLGT +N FGGAS AK V EK+G EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28 KKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSL 311
DGC+N IE E++V+GFGRSG AVG+IPGVRF+ KVANVSL
Sbjct: 88 DGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSL 130
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 137 bits (344), Expect = 1e-32
Identities = 69/106 (65%), Positives = 85/106 (80%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ +H+GTR+ +N FGGAS AK V EKVG EA+QPNSAIRKC RV++ +NGKK+TA VP
Sbjct: 28 KKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
DGC+N IE E++V+GFGR G AVG+IPGVRF+ KVANVSLL L
Sbjct: 88 DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 135 bits (341), Expect = 2e-32
Identities = 69/106 (65%), Positives = 84/106 (79%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ +HLGTR+ +N FG AS AK V EKVG EA+QPNSAIRKC RV++ +NGKKITA VPN
Sbjct: 28 KKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
DGC+N IE E++V+GFGR G AVG+IPGVRF+ KVAN SL+ L
Sbjct: 88 DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIAL 133
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 135 bits (339), Expect = 4e-32
Identities = 70/106 (66%), Positives = 84/106 (79%)
Frame = +3
Query: 3 ENSHLGTRF*SNFFGGASRAKDSV*EKVGEEARQPNSAIRKCERVRVSENGKKITACVPN 182
+ +HLGTR+ +N FGGAS AK V EKVG EA+QPNSAIRKC RV++ +NGKKITA VP
Sbjct: 28 KKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPR 87
Query: 183 DGCINLIE*KYEIMVSGFGRSGQAVGEIPGVRFREGKVANVSLLIL 320
DG +N IE E++V+GFGR G AVG+IPGVRF+ KVANVSLL L
Sbjct: 88 DGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,045,552
Number of Sequences: 369166
Number of extensions: 835436
Number of successful extensions: 2543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2523
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)