Planaria EST Database


DrC_02423

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02423
         (345 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19751|R1AB_CVMJH  Replicase polyprotein 1ab (pp1ab) (ORF...    29   2.9  
sp|P16342|R1AB_CVMA5  Replicase polyprotein 1ab (pp1ab) (ORF...    29   2.9  
sp|Q9PYA3|R1AB_CVM2  Replicase polyprotein 1ab (pp1ab) (ORF1...    29   2.9  
sp|P56934|LEU2_BUCAI  3-isopropylmalate dehydratase large su...    29   2.9  
sp|P87110|ITR2_SCHPO  Myo-inositol transporter 2                   28   6.6  
sp|P23266|O1361_RAT  Olfactory receptor 1361 (Olfactory rece...    28   8.6  
>sp|P19751|R1AB_CVMJH Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
            Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
            p65; p210 (Papain-like proteinases 1/2)
            (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
            (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
            p22; p12; Growth factor-like peptide (GFL) (p15);
            RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
            (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
          Length = 7180

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -3

Query: 307  IYIIRLLMLF*QDYQKTLLCLHRSIVFHH--YFHNSLQILFPLFWFLHISFLNHLDF--- 143
            ++ I  LMLF      TL CL+    F+   YF + + ++  L W +    +  L F   
Sbjct: 3160 VWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCIT 3219

Query: 142  YSAISFSNCHTCLF 101
            Y A+  SN    LF
Sbjct: 3220 YVAVVVSNHALWLF 3233
>sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
            Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
            p65; p210 (Papain-like proteinases 1/2)
            (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
            (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
            p22; p12; Growth factor-like peptide (GFL) (p15);
            RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
            (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
          Length = 7176

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -3

Query: 307  IYIIRLLMLF*QDYQKTLLCLHRSIVFHH--YFHNSLQILFPLFWFLHISFLNHLDF--- 143
            ++ I  LMLF      TL CL+    F+   YF + + ++  L W +    +  L F   
Sbjct: 3157 VWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCII 3216

Query: 142  YSAISFSNCHTCLF 101
            Y A+  SN    LF
Sbjct: 3217 YVAVVVSNHALWLF 3230
>sp|Q9PYA3|R1AB_CVM2 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
            Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
            p65; p210 (Papain-like proteinases 1/2)
            (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
            (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
            p22; p12; Growth factor-like peptide (GFL) (p15);
            RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
            (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
          Length = 7124

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -3

Query: 307  IYIIRLLMLF*QDYQKTLLCLHRSIVFHH--YFHNSLQILFPLFWFLHISFLNHLDF--- 143
            ++ I  LMLF      TL CL+    F+   YF + + ++  L W +    +  L F   
Sbjct: 3103 VWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCII 3162

Query: 142  YSAISFSNCHTCLF 101
            Y A+  SN    LF
Sbjct: 3163 YVAVVVSNHALWLF 3176
>sp|P56934|LEU2_BUCAI 3-isopropylmalate dehydratase large subunit (Isopropylmalate
           isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 471

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +1

Query: 217 NNDERQLNDEDIAEF--FDNLVKRALANE*CKFSIGLKLLKFIS 342
           N D+    D+ I +F  FDNL+K+ LA   CK+ +GLK+  +++
Sbjct: 293 NPDQVISIDQKIPDFSSFDNLIKKDLAKSACKY-MGLKIGTYLT 335
>sp|P87110|ITR2_SCHPO Myo-inositol transporter 2
          Length = 557

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 13/50 (26%)
 Frame = -3

Query: 229 FHHYFHNSLQILFP-------------LFWFLHISFLNHLDFYSAISFSN 119
           F H+FH SL++LF              L WF   S  N + ++SAI F +
Sbjct: 313 FQHFFH-SLKVLFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIFQS 361
>sp|P23266|O1361_RAT Olfactory receptor 1361 (Olfactory receptor-like protein F5)
          Length = 313

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
 Frame = -3

Query: 319 NQSKIYIIRLLMLF*QDYQKTLLCLHRSIVFHHYFHNSLQILF----------PLFWFL- 173
           NQS +    LL L  Q  Q+ LL L   I++      +L I+           P+++FL 
Sbjct: 5   NQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLS 64

Query: 172 HISFL--------------NHLDFYSAISFSNCHTCLFLLLV 89
           ++SF+              NH+    AISFS C T L+ L V
Sbjct: 65  NLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAV 106
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,850,118
Number of Sequences: 369166
Number of extensions: 431594
Number of successful extensions: 1138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)