Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_A23
(345 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19751|R1AB_CVMJH Replicase polyprotein 1ab (pp1ab) (ORF... 29 2.9
sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF... 29 2.9
sp|Q9PYA3|R1AB_CVM2 Replicase polyprotein 1ab (pp1ab) (ORF1... 29 2.9
sp|P56934|LEU2_BUCAI 3-isopropylmalate dehydratase large su... 29 2.9
sp|P87110|ITR2_SCHPO Myo-inositol transporter 2 28 6.6
sp|P23266|O1361_RAT Olfactory receptor 1361 (Olfactory rece... 28 8.6
>sp|P19751|R1AB_CVMJH Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7180
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -3
Query: 307 IYIIRLLMLF*QDYQKTLLCLHRSIVFHH--YFHNSLQILFPLFWFLHISFLNHLDF--- 143
++ I LMLF TL CL+ F+ YF + + ++ L W + + L F
Sbjct: 3160 VWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCIT 3219
Query: 142 YSAISFSNCHTCLF 101
Y A+ SN LF
Sbjct: 3220 YVAVVVSNHALWLF 3233
>sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7176
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -3
Query: 307 IYIIRLLMLF*QDYQKTLLCLHRSIVFHH--YFHNSLQILFPLFWFLHISFLNHLDF--- 143
++ I LMLF TL CL+ F+ YF + + ++ L W + + L F
Sbjct: 3157 VWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCII 3216
Query: 142 YSAISFSNCHTCLF 101
Y A+ SN LF
Sbjct: 3217 YVAVVVSNHALWLF 3230
>sp|Q9PYA3|R1AB_CVM2 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7124
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -3
Query: 307 IYIIRLLMLF*QDYQKTLLCLHRSIVFHH--YFHNSLQILFPLFWFLHISFLNHLDF--- 143
++ I LMLF TL CL+ F+ YF + + ++ L W + + L F
Sbjct: 3103 VWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCII 3162
Query: 142 YSAISFSNCHTCLF 101
Y A+ SN LF
Sbjct: 3163 YVAVVVSNHALWLF 3176
>sp|P56934|LEU2_BUCAI 3-isopropylmalate dehydratase large subunit (Isopropylmalate
isomerase) (Alpha-IPM isomerase) (IPMI)
Length = 471
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 217 NNDERQLNDEDIAEF--FDNLVKRALANE*CKFSIGLKLLKFIS 342
N D+ D+ I +F FDNL+K+ LA CK+ +GLK+ +++
Sbjct: 293 NPDQVISIDQKIPDFSSFDNLIKKDLAKSACKY-MGLKIGTYLT 335
>sp|P87110|ITR2_SCHPO Myo-inositol transporter 2
Length = 557
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 13/50 (26%)
Frame = -3
Query: 229 FHHYFHNSLQILFP-------------LFWFLHISFLNHLDFYSAISFSN 119
F H+FH SL++LF L WF S N + ++SAI F +
Sbjct: 313 FQHFFH-SLKVLFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIFQS 361
>sp|P23266|O1361_RAT Olfactory receptor 1361 (Olfactory receptor-like protein F5)
Length = 313
Score = 27.7 bits (60), Expect = 8.6
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
Frame = -3
Query: 319 NQSKIYIIRLLMLF*QDYQKTLLCLHRSIVFHHYFHNSLQILF----------PLFWFL- 173
NQS + LL L Q Q+ LL L I++ +L I+ P+++FL
Sbjct: 5 NQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLS 64
Query: 172 HISFL--------------NHLDFYSAISFSNCHTCLFLLLV 89
++SF+ NH+ AISFS C T L+ L V
Sbjct: 65 NLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAV 106
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,850,118
Number of Sequences: 369166
Number of extensions: 431594
Number of successful extensions: 1138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)