Planaria EST Database


DrC_02422

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02422
         (794 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NQX5|NPDC1_HUMAN  Neural proliferation differentiation ...    44   4e-04
sp|Q64322|NPDC1_MOUSE  Neural proliferation differentiation ...    42   0.001
sp|Q93249|CAB1_CAEEL  Protein cab-1                                38   0.036
sp|P53317|YG5C_YEAST  Hypothetical 22.3 kDa protein in MGA1-...    35   0.24 
sp|Q979L9|GATE_THEVO  Glutamyl-tRNA(Gln) amidotransferase su...    30   9.9  
>sp|Q9NQX5|NPDC1_HUMAN Neural proliferation differentiation and control protein 1
           precursor (NPDC-1 protein)
          Length = 325

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 26/70 (37%), Positives = 34/70 (48%)
 Frame = +1

Query: 457 GDKKLAQSAXXXXXXXXXXXXIALEKADSNLRNXXXXXXXXXXXXXXXFTVYECPGMAMG 636
           GD++LAQSA            + LE+     +                FTVYECPG+A  
Sbjct: 238 GDQRLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGD-FTVYECPGLAPT 296

Query: 637 GELEVKNPLF 666
           GE+EV+NPLF
Sbjct: 297 GEMEVRNPLF 306
>sp|Q64322|NPDC1_MOUSE Neural proliferation differentiation and control protein 1
           precursor (NPDC-1 protein)
          Length = 332

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = +1

Query: 601 FTVYECPGMAMGGELEVKNPLF 666
           FTVYECPG+A  GE+EV+NPLF
Sbjct: 292 FTVYECPGLAPTGEMEVRNPLF 313
>sp|Q93249|CAB1_CAEEL Protein cab-1
          Length = 425

 Score = 37.7 bits (86), Expect = 0.036
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +1

Query: 601 FTVYECPGMAMGGELEVKNPLFQADP 678
           ++VYECPG+A  G++EV NP F A P
Sbjct: 400 YSVYECPGLAPTGDIEVCNPNFAAQP 425
>sp|P53317|YG5C_YEAST Hypothetical 22.3 kDa protein in MGA1-GCN4 intergenic region
          Length = 196

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +1

Query: 76  QFSEKINNQRIDGSVNSQWDTEIAEVLHLLGVNDENGLSHPQKRSKNKKDHAPLE 240
           +  EK+N Q     + S +    A VL  L  +DE G+S+  +R+K  KDH  LE
Sbjct: 6   ELQEKLNLQ---AKLQSTFSNNTAAVLDWLKESDETGISNDTERNKQLKDHKELE 57
>sp|Q979L9|GATE_THEVO Glutamyl-tRNA(Gln) amidotransferase subunit E (Glu-ADT subunit E)
          Length = 598

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 302 VAITVYCHLNFGRLICRCPDISSGA*SFLF 213
           + + ++  LN G+L CRCP  +SG   + F
Sbjct: 8   IGLEIHFQLNTGKLFCRCPVETSGTEKYRF 37
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,810,368
Number of Sequences: 369166
Number of extensions: 1607857
Number of successful extensions: 3349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3348
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)