Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_A21
(794 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NQX5|NPDC1_HUMAN Neural proliferation differentiation ... 44 4e-04
sp|Q64322|NPDC1_MOUSE Neural proliferation differentiation ... 42 0.001
sp|Q93249|CAB1_CAEEL Protein cab-1 38 0.036
sp|P53317|YG5C_YEAST Hypothetical 22.3 kDa protein in MGA1-... 35 0.24
sp|Q979L9|GATE_THEVO Glutamyl-tRNA(Gln) amidotransferase su... 30 9.9
>sp|Q9NQX5|NPDC1_HUMAN Neural proliferation differentiation and control protein 1
precursor (NPDC-1 protein)
Length = 325
Score = 44.3 bits (103), Expect = 4e-04
Identities = 26/70 (37%), Positives = 34/70 (48%)
Frame = +1
Query: 457 GDKKLAQSAXXXXXXXXXXXXIALEKADSNLRNXXXXXXXXXXXXXXXFTVYECPGMAMG 636
GD++LAQSA + LE+ + FTVYECPG+A
Sbjct: 238 GDQRLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGD-FTVYECPGLAPT 296
Query: 637 GELEVKNPLF 666
GE+EV+NPLF
Sbjct: 297 GEMEVRNPLF 306
>sp|Q64322|NPDC1_MOUSE Neural proliferation differentiation and control protein 1
precursor (NPDC-1 protein)
Length = 332
Score = 42.4 bits (98), Expect = 0.001
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +1
Query: 601 FTVYECPGMAMGGELEVKNPLF 666
FTVYECPG+A GE+EV+NPLF
Sbjct: 292 FTVYECPGLAPTGEMEVRNPLF 313
>sp|Q93249|CAB1_CAEEL Protein cab-1
Length = 425
Score = 37.7 bits (86), Expect = 0.036
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 601 FTVYECPGMAMGGELEVKNPLFQADP 678
++VYECPG+A G++EV NP F A P
Sbjct: 400 YSVYECPGLAPTGDIEVCNPNFAAQP 425
>sp|P53317|YG5C_YEAST Hypothetical 22.3 kDa protein in MGA1-GCN4 intergenic region
Length = 196
Score = 35.0 bits (79), Expect = 0.24
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 76 QFSEKINNQRIDGSVNSQWDTEIAEVLHLLGVNDENGLSHPQKRSKNKKDHAPLE 240
+ EK+N Q + S + A VL L +DE G+S+ +R+K KDH LE
Sbjct: 6 ELQEKLNLQ---AKLQSTFSNNTAAVLDWLKESDETGISNDTERNKQLKDHKELE 57
>sp|Q979L9|GATE_THEVO Glutamyl-tRNA(Gln) amidotransferase subunit E (Glu-ADT subunit E)
Length = 598
Score = 29.6 bits (65), Expect = 9.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 302 VAITVYCHLNFGRLICRCPDISSGA*SFLF 213
+ + ++ LN G+L CRCP +SG + F
Sbjct: 8 IGLEIHFQLNTGKLFCRCPVETSGTEKYRF 37
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,810,368
Number of Sequences: 369166
Number of extensions: 1607857
Number of successful extensions: 3349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3348
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)