Planaria EST Database


DrC_02421

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02421
         (589 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36365|FMO1_RAT  Dimethylaniline monooxygenase [N-oxide-f...    32   1.5  
sp|P14966|COAT_CLVN  Coat protein (CP)                             31   2.6  
sp|P03561|COAT_CLVK  Coat protein (CP)                             30   3.4  
sp|P17636|FMO1_RABIT  Dimethylaniline monooxygenase [N-oxide...    30   4.5  
sp|Q9X597|C26AA_BACTF  Pesticidal crystal protein cry26Aa (I...    30   4.5  
sp|P34109|MYOD_DICDI  Myosin ID heavy chain                        30   5.8  
sp|P27257|COAT_TYLCS  Coat protein (CP)                            30   5.8  
sp|Q09773|YA84_SCHPO  Hypothetical protein C22F3.04 in chrom...    29   7.6  
sp|P38608|COAT_TYLCU  Coat protein (CP)                            29   7.6  
sp|Q5NVS6|CX033_PONPY  Protein CXorf33 homolog precursor           29   7.6  
>sp|P36365|FMO1_RAT Dimethylaniline monooxygenase [N-oxide-forming] 1 (Hepatic
           flavin-containing monooxygenase 1) (FMO 1)
           (Dimethylaniline oxidase 1)
          Length = 532

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 31  VYTIIMKFPAKDLPLYTEFPDPKFQYEYVPNK--RGYLECVISPYRRTAQQYFSSLTRTK 204
           +Y  ++   +K++  Y++FP P+    +VPN     YL+   + +      YF++   + 
Sbjct: 54  LYNSVVSNSSKEMSCYSDFPFPEDYPNFVPNSLFLEYLQLYATQFNLLRCIYFNTKVCSI 113

Query: 205 TKVEEYYSEGSEKVAGVVSTIQSN 276
           TK  ++   G  +V  V    QS+
Sbjct: 114 TKRPDFAVSGQWEVVTVCQGKQSS 137
>sp|P14966|COAT_CLVN Coat protein (CP)
          Length = 258

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
 Frame = -2

Query: 420 VLRKYKSA-----SRSSSNHHVKKFSKISPFVTYYNTSKATYCNYTSF*NNIRI*LNSTY 256
           VLRK+ +      S       VK+F +++  VTY +     Y N+T   N + + +  T+
Sbjct: 180 VLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYENHTE--NALLLYMACTH 237

Query: 255 HSSDFFRSLRI-VFFYFGLGS 196
            S+  + +L+I ++FY  +G+
Sbjct: 238 ASNPVYATLKIRIYFYDSIGN 258
>sp|P03561|COAT_CLVK Coat protein (CP)
          Length = 258

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -2

Query: 372 VKKFSKISPFVTYYNTSKATYCNYTSF*NNIRI*LNSTYHSSDFFRSLRI-VFFYFGLGS 196
           VK+F +++  VTY +     Y N+T   N + + +  T+ S+  + +L+I ++FY  +G+
Sbjct: 201 VKRFYRLNHHVTYNHQEAGKYENHTE--NALLLYMACTHASNPVYATLKIRIYFYDSIGN 258
>sp|P17636|FMO1_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 1 (Hepatic
           flavin-containing monooxygenase 1) (FMO 1)
           (Dimethylaniline oxidase 1) (FMO 1A1) (FMO form 1)
          Length = 535

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 31  VYTIIMKFPAKDLPLYTEFPDPKFQYEYVPNKR--GYLECVISPYRRTAQQYFSSLTRTK 204
           +Y  ++    K++  Y++FP P+    YVPN +   YL+     +       F +   + 
Sbjct: 54  LYKSVVSNSCKEMSCYSDFPFPEDYPNYVPNSQFLDYLKMYADRFSLLKSIQFKTTVFSI 113

Query: 205 TKVEEYYSEGSEKV 246
           TK +++   G  +V
Sbjct: 114 TKCQDFNVSGQWEV 127
>sp|Q9X597|C26AA_BACTF Pesticidal crystal protein cry26Aa (Insecticidal delta-endotoxin
           CryXXVIA(a)) (Crystaline entomocidal protoxin) (131 kDa
           crystal protein)
          Length = 1163

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = +1

Query: 118 PNKRGYLECVISPYRRTAQQYFSSLTRTKTKVEE-------YYSEGSEKVAGVVSTIQSN 276
           P + GY+  +   Y  T    F +++ +KT VE+       YYSEG  +  GV ST Q  
Sbjct: 416 PYQIGYVTPI---YFITRAVNFFTVSGSKTSVEKYYSKKDRYYSEGLPEEQGVFSTEQLP 472

Query: 277 PNIILKAGVITIS 315
           PN I +   I  S
Sbjct: 473 PNSIAEPEHIAYS 485
>sp|P34109|MYOD_DICDI Myosin ID heavy chain
          Length = 1109

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 124 KRGYLECVISPYRRTAQQYFSSLTRTKTKVEEYYSEG 234
           K G+ + VI+      QQ F  LT  KT+ EEY++EG
Sbjct: 394 KNGFEQMVINYVNERLQQIFIELT-LKTEQEEYFNEG 429
>sp|P27257|COAT_TYLCS Coat protein (CP)
          Length = 257

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -2

Query: 372 VKKFSKISPFVTYYNTSKATYCNYTSF*NNIRI*LNSTYHSSDFFRSLRI-VFFY 211
           +K+F KI+  V Y +  +A Y N+T   N + + +  T+ S+  + +L+I ++FY
Sbjct: 200 LKRFFKINTHVVYNHQEQAKYENHTE--NALLLYMACTHASNPVYATLKIRIYFY 252
>sp|Q09773|YA84_SCHPO Hypothetical protein C22F3.04 in chromosome I
          Length = 1428

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 232 PQNSILLLWSWFSSVKKSTVGLFFDKEILHTPNILFYLV 116
           P   + L+   F+SV      +F D+E+L TP +L YL+
Sbjct: 315 PSMPLGLIMGVFNSVFAGYCTIFCDEEVLKTPGLLAYLI 353
>sp|P38608|COAT_TYLCU Coat protein (CP)
          Length = 257

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -2

Query: 372 VKKFSKISPFVTYYNTSKATYCNYTSF*NNIRI*LNSTYHSSDFFRSLRI-VFFY 211
           +K+F K++  V Y +  +A Y N+T   N + + +  T+ S+  + +L+I ++FY
Sbjct: 200 LKRFFKVNTHVVYNHQEQAKYENHTE--NALLLYMACTHASNPVYATLKIRIYFY 252
>sp|Q5NVS6|CX033_PONPY Protein CXorf33 homolog precursor
          Length = 266

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 11/143 (7%)
 Frame = +1

Query: 61  KDLPLYTEFPDPKFQYEYVPNKRGYLECVISPYRRTAQQYFSSLTRTKTKVEEYYSEGSE 240
           + LP+YT    P  Q +YV  + G+L+   +  R     Y          V+        
Sbjct: 39  EQLPIYTA---PPLQSKYVEEQPGHLQMGFASIRTATGCYIGWCKGVYVFVKN------- 88

Query: 241 KVAGVVSTIQ---------SNP--NIILKAGVITISXXXXXXXXXXXXYFRKFFYMMIGA 387
              G++ T+Q          NP  + + K GVIT+S             F+K  Y +  A
Sbjct: 89  ---GIMDTVQFGKDAYVYMKNPPRDFLPKMGVITVSGLAGLVSARKGSKFKKITYPLGLA 145

Query: 388 GTASALIFPQHAMCGFKMSMNKL 456
              + + +P  ++   K++  K+
Sbjct: 146 TLGATVCYPVQSVIIAKVTAKKI 168
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,333,752
Number of Sequences: 369166
Number of extensions: 1148448
Number of successful extensions: 2826
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2824
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)