Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_A13
(589 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36365|FMO1_RAT Dimethylaniline monooxygenase [N-oxide-f... 32 1.5
sp|P14966|COAT_CLVN Coat protein (CP) 31 2.6
sp|P03561|COAT_CLVK Coat protein (CP) 30 3.4
sp|P17636|FMO1_RABIT Dimethylaniline monooxygenase [N-oxide... 30 4.5
sp|Q9X597|C26AA_BACTF Pesticidal crystal protein cry26Aa (I... 30 4.5
sp|P34109|MYOD_DICDI Myosin ID heavy chain 30 5.8
sp|P27257|COAT_TYLCS Coat protein (CP) 30 5.8
sp|Q09773|YA84_SCHPO Hypothetical protein C22F3.04 in chrom... 29 7.6
sp|P38608|COAT_TYLCU Coat protein (CP) 29 7.6
sp|Q5NVS6|CX033_PONPY Protein CXorf33 homolog precursor 29 7.6
>sp|P36365|FMO1_RAT Dimethylaniline monooxygenase [N-oxide-forming] 1 (Hepatic
flavin-containing monooxygenase 1) (FMO 1)
(Dimethylaniline oxidase 1)
Length = 532
Score = 31.6 bits (70), Expect = 1.5
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 31 VYTIIMKFPAKDLPLYTEFPDPKFQYEYVPNK--RGYLECVISPYRRTAQQYFSSLTRTK 204
+Y ++ +K++ Y++FP P+ +VPN YL+ + + YF++ +
Sbjct: 54 LYNSVVSNSSKEMSCYSDFPFPEDYPNFVPNSLFLEYLQLYATQFNLLRCIYFNTKVCSI 113
Query: 205 TKVEEYYSEGSEKVAGVVSTIQSN 276
TK ++ G +V V QS+
Sbjct: 114 TKRPDFAVSGQWEVVTVCQGKQSS 137
>sp|P14966|COAT_CLVN Coat protein (CP)
Length = 258
Score = 30.8 bits (68), Expect = 2.6
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = -2
Query: 420 VLRKYKSA-----SRSSSNHHVKKFSKISPFVTYYNTSKATYCNYTSF*NNIRI*LNSTY 256
VLRK+ + S VK+F +++ VTY + Y N+T N + + + T+
Sbjct: 180 VLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYENHTE--NALLLYMACTH 237
Query: 255 HSSDFFRSLRI-VFFYFGLGS 196
S+ + +L+I ++FY +G+
Sbjct: 238 ASNPVYATLKIRIYFYDSIGN 258
>sp|P03561|COAT_CLVK Coat protein (CP)
Length = 258
Score = 30.4 bits (67), Expect = 3.4
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -2
Query: 372 VKKFSKISPFVTYYNTSKATYCNYTSF*NNIRI*LNSTYHSSDFFRSLRI-VFFYFGLGS 196
VK+F +++ VTY + Y N+T N + + + T+ S+ + +L+I ++FY +G+
Sbjct: 201 VKRFYRLNHHVTYNHQEAGKYENHTE--NALLLYMACTHASNPVYATLKIRIYFYDSIGN 258
>sp|P17636|FMO1_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 1 (Hepatic
flavin-containing monooxygenase 1) (FMO 1)
(Dimethylaniline oxidase 1) (FMO 1A1) (FMO form 1)
Length = 535
Score = 30.0 bits (66), Expect = 4.5
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 31 VYTIIMKFPAKDLPLYTEFPDPKFQYEYVPNKR--GYLECVISPYRRTAQQYFSSLTRTK 204
+Y ++ K++ Y++FP P+ YVPN + YL+ + F + +
Sbjct: 54 LYKSVVSNSCKEMSCYSDFPFPEDYPNYVPNSQFLDYLKMYADRFSLLKSIQFKTTVFSI 113
Query: 205 TKVEEYYSEGSEKV 246
TK +++ G +V
Sbjct: 114 TKCQDFNVSGQWEV 127
>sp|Q9X597|C26AA_BACTF Pesticidal crystal protein cry26Aa (Insecticidal delta-endotoxin
CryXXVIA(a)) (Crystaline entomocidal protoxin) (131 kDa
crystal protein)
Length = 1163
Score = 30.0 bits (66), Expect = 4.5
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +1
Query: 118 PNKRGYLECVISPYRRTAQQYFSSLTRTKTKVEE-------YYSEGSEKVAGVVSTIQSN 276
P + GY+ + Y T F +++ +KT VE+ YYSEG + GV ST Q
Sbjct: 416 PYQIGYVTPI---YFITRAVNFFTVSGSKTSVEKYYSKKDRYYSEGLPEEQGVFSTEQLP 472
Query: 277 PNIILKAGVITIS 315
PN I + I S
Sbjct: 473 PNSIAEPEHIAYS 485
>sp|P34109|MYOD_DICDI Myosin ID heavy chain
Length = 1109
Score = 29.6 bits (65), Expect = 5.8
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 124 KRGYLECVISPYRRTAQQYFSSLTRTKTKVEEYYSEG 234
K G+ + VI+ QQ F LT KT+ EEY++EG
Sbjct: 394 KNGFEQMVINYVNERLQQIFIELT-LKTEQEEYFNEG 429
>sp|P27257|COAT_TYLCS Coat protein (CP)
Length = 257
Score = 29.6 bits (65), Expect = 5.8
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = -2
Query: 372 VKKFSKISPFVTYYNTSKATYCNYTSF*NNIRI*LNSTYHSSDFFRSLRI-VFFY 211
+K+F KI+ V Y + +A Y N+T N + + + T+ S+ + +L+I ++FY
Sbjct: 200 LKRFFKINTHVVYNHQEQAKYENHTE--NALLLYMACTHASNPVYATLKIRIYFY 252
>sp|Q09773|YA84_SCHPO Hypothetical protein C22F3.04 in chromosome I
Length = 1428
Score = 29.3 bits (64), Expect = 7.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 232 PQNSILLLWSWFSSVKKSTVGLFFDKEILHTPNILFYLV 116
P + L+ F+SV +F D+E+L TP +L YL+
Sbjct: 315 PSMPLGLIMGVFNSVFAGYCTIFCDEEVLKTPGLLAYLI 353
>sp|P38608|COAT_TYLCU Coat protein (CP)
Length = 257
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = -2
Query: 372 VKKFSKISPFVTYYNTSKATYCNYTSF*NNIRI*LNSTYHSSDFFRSLRI-VFFY 211
+K+F K++ V Y + +A Y N+T N + + + T+ S+ + +L+I ++FY
Sbjct: 200 LKRFFKVNTHVVYNHQEQAKYENHTE--NALLLYMACTHASNPVYATLKIRIYFY 252
>sp|Q5NVS6|CX033_PONPY Protein CXorf33 homolog precursor
Length = 266
Score = 29.3 bits (64), Expect = 7.6
Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 11/143 (7%)
Frame = +1
Query: 61 KDLPLYTEFPDPKFQYEYVPNKRGYLECVISPYRRTAQQYFSSLTRTKTKVEEYYSEGSE 240
+ LP+YT P Q +YV + G+L+ + R Y V+
Sbjct: 39 EQLPIYTA---PPLQSKYVEEQPGHLQMGFASIRTATGCYIGWCKGVYVFVKN------- 88
Query: 241 KVAGVVSTIQ---------SNP--NIILKAGVITISXXXXXXXXXXXXYFRKFFYMMIGA 387
G++ T+Q NP + + K GVIT+S F+K Y + A
Sbjct: 89 ---GIMDTVQFGKDAYVYMKNPPRDFLPKMGVITVSGLAGLVSARKGSKFKKITYPLGLA 145
Query: 388 GTASALIFPQHAMCGFKMSMNKL 456
+ + +P ++ K++ K+
Sbjct: 146 TLGATVCYPVQSVIIAKVTAKKI 168
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,333,752
Number of Sequences: 369166
Number of extensions: 1148448
Number of successful extensions: 2826
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2824
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)