Planaria EST Database


DrC_02420

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02420
         (941 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53297|PBP1_YEAST  PAB1-binding protein 1                       58   4e-08
sp|Q7TQH0|ATX2L_MOUSE  Ataxin-2-like protein                       46   1e-04
sp|Q8WWM7|ATX2L_HUMAN  Ataxin-2-like protein (Ataxin-2 domai...    45   3e-04
sp|Q99700|ATX2_HUMAN  Ataxin-2 (Spinocerebellar ataxia type ...    45   3e-04
sp|O70305|ATX2_MOUSE  Ataxin-2 (Spinocerebellar ataxia type ...    44   5e-04
sp|P35727|YKG1_YEAST  Hypothetical 13.5 kDa protein in MSN4-...    37   0.11 
sp|Q96L73|NSD1_HUMAN  Histone-lysine N-methyltransferase, H3...    36   0.18 
sp|P14873|MAP1B_MOUSE  Microtubule-associated protein 1B (MA...    35   0.31 
sp|P40949|YQXM_BACSU  Hypothetical protein yqxM                    34   0.52 
sp|P34216|YBE7_YEAST  Hypothetical 150.8 kDa protein in SEC1...    34   0.52 
>sp|P53297|PBP1_YEAST PAB1-binding protein 1
          Length = 722

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 69/272 (25%), Positives = 120/272 (44%), Gaps = 35/272 (12%)
 Frame = +1

Query: 22  RNQDSHVIYSGDRKKSLCDLSIYTIARFLMGNEVQIITQFDRYEGVLRTFD-STCLGLSK 198
           +N  S    + +  ++  D   Y +A  +  +    +T   +Y G+L + +  +  G+  
Sbjct: 32  QNNSSMFYENPEITRNFDDRQDYLLANSIGSDVTVTVTSGVKYTGLLVSCNLESTNGIDV 91

Query: 199 VFVF----DNGLSDSIP-IIKTQLEFKEVLLKDILLIKM----LNGNGKLESVIIDQEIS 351
           V  F    D+G+SDS+  + KT  E   +  +D+  +++    L+ + K E+    +   
Sbjct: 92  VLRFPRVADSGVSDSVDDLAKTLGETLLIHGEDVAELELKNIDLSLDEKWENSKAQETTP 151

Query: 352 QRKQLFKPNLNEDKNLVPYF-----------DEEETQLHXXXXXXXLN-------ASLKS 477
            R  + K  +N + N V  F           + +E +L                  +L+ 
Sbjct: 152 ARTNIEKERVNGESNEVTKFRTDVDISGSGREIKERKLEKWTPEEGAEHFDINKGKALED 211

Query: 478 DQNCWYDPETMLKENEERFNVKKTWNSETMEEYTTQIDKSDPLLKEKMEYAERIAKEIEN 657
           D   W         NE++F VK T++      YTT+I+K DP   ++++ AERIAKEIE+
Sbjct: 212 DSASW----DQFAVNEKKFGVKSTFDEHL---YTTKINKDDPNYSKRLQEAERIAKEIES 264

Query: 658 ESNM-------KRGRIPDDSGEQDEEIMFSAV 732
           +           RG I DDSG  DEE ++S V
Sbjct: 265 QGTSGNIHIAEDRGIIIDDSG-LDEEDLYSGV 295
>sp|Q7TQH0|ATX2L_MOUSE Ataxin-2-like protein
          Length = 1049

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 10/116 (8%)
 Frame = +1

Query: 469 LKSDQNCWYDPETMLKENEERFNVKKTWNSETMEEYTTQIDK-SDPLLKEKMEYAERIAK 645
           L+SD +  +DP  M K NEE + VK T++S ++  YT  ++K +    +++   A ++A+
Sbjct: 241 LESDMSNGWDPNEMFKFNEENYGVKTTYDS-SLSSYTVPLEKDNSEEFRQRELRAAQLAR 299

Query: 646 EIENESNMK-RGRIPDDSGEQDEEIMFSAVM--------PSVVNKSETPVATPIRL 786
           EIE+    + R  + +D G  +EE   SAV         PS+V++    +  P R+
Sbjct: 300 EIESSPQYRLRIAMENDDGRTEEE-KHSAVQRQGSGRESPSLVSREGKYIPLPQRV 354
>sp|Q8WWM7|ATX2L_HUMAN Ataxin-2-like protein (Ataxin-2 domain protein) (Ataxin-2-related
           protein)
          Length = 1075

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
 Frame = +1

Query: 469 LKSDQNCWYDPETMLKENEERFNVKKTWNSETMEEYTTQIDK-SDPLLKEKMEYAERIAK 645
           L+SD +  +DP  M K NEE + VK T++S ++  YT  ++K +    +++   A ++A+
Sbjct: 243 LESDMSNGWDPNEMFKFNEENYGVKTTYDS-SLSSYTVPLEKDNSEEFRQRELRAAQLAR 301

Query: 646 EIENESNMK-RGRIPDDSGEQDEE 714
           EIE+    + R  + +D G  +EE
Sbjct: 302 EIESSPQYRLRIAMENDDGRTEEE 325
>sp|Q99700|ATX2_HUMAN Ataxin-2 (Spinocerebellar ataxia type 2 protein) (Trinucleotide
           repeat-containing gene 13 protein)
          Length = 1312

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 6/201 (2%)
 Frame = +1

Query: 148 YEGVLRTFDSTCLGLSKVFVFDNGLSDSIPIIKTQLEFKEVLLK--DILLI--KMLNGNG 315
           YEGV +T+   C  +       +  S S P  K +   + +L K  D +++  K ++ + 
Sbjct: 289 YEGVFKTYSPKCDLVLDAAHEKSTESSSGP--KREEIMESILFKCSDFVVVQFKDMDSSY 346

Query: 316 KLESVIIDQEISQRKQLFKPNLNEDKNLVPYFDEEETQLHXXXXXXXLNASLKSDQNCWY 495
                  D  IS +        +++K+L P+   E T             +L++D +  +
Sbjct: 347 AKRDAFTDSAISAKVN----GEHKEKDLEPWDAGELTANEELE-------ALENDVSNGW 395

Query: 496 DPETMLKENEERFNVKKTWNSETMEEYTTQI--DKSDPLLKEKMEYAERIAKEIENESNM 669
           DP  M + NEE + V  T++S ++  YT  +  D S+  LK +   A ++A+EIE+ +  
Sbjct: 396 DPNDMFRYNEENYGVVSTYDS-SLSSYTVPLERDNSEEFLKREAR-ANQLAEEIESSAQY 453

Query: 670 KRGRIPDDSGEQDEEIMFSAV 732
           K  R+  ++ ++ EE  ++AV
Sbjct: 454 K-ARVALENDDRSEEEKYTAV 473
>sp|O70305|ATX2_MOUSE Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)
          Length = 1285

 Score = 44.3 bits (103), Expect = 5e-04
 Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
 Frame = +1

Query: 469 LKSDQNCWYDPETMLKENEERFNVKKTWNSETMEEYTTQI--DKSDPLLKEKMEYAERIA 642
           L++D +  +DP  M + NEE + V  T++S ++  YT  +  D S+  LK +   A ++A
Sbjct: 357 LENDVSNGWDPNDMFRYNEENYGVVSTYDS-SLSSYTVPLERDNSEEFLKREAR-ANQLA 414

Query: 643 KEIENESNMKRGRIPDDSGEQDEEIMFSAV 732
           +EIE+ +  K  R+  ++ ++ EE  ++AV
Sbjct: 415 EEIESSAQYK-ARVALENDDRSEEEKYTAV 443
>sp|P35727|YKG1_YEAST Hypothetical 13.5 kDa protein in MSN4-FBA1 intergenic region
          Length = 113

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 502 ETMLKENEERFNVKKTWNSETMEEYTTQIDKSDPLLKEKMEYAERIAKEIENESN 666
           E  L+E E +F +K     + +E    +ID    +L++K+ Y ER+ KE+E   N
Sbjct: 41  EAWLEELENKFKLKDDVELDDVENLRAEIDMKLNMLEDKVSYYERLYKELEEFQN 95
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
            specific (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear
            receptor binding SET domain containing protein 1)
            (NR-binding SET domain containing protein) (Androgen
            receptor-associated coregulator 267)
          Length = 2696

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = +1

Query: 499  PETMLKENEERFNVKKTWNSETMEEYTTQIDKSDPLLKEKMEYAERIAKEIENESNMKRG 678
            PE  ++  ++R      W  E  EEY  QI       K+  E   +++   E ES + RG
Sbjct: 1263 PEPAVRSEKKRLRKPSKWLLEYTEEYD-QIFAPKKKQKKVQEQVHKVSSRCEEESLLARG 1321

Query: 679  RIPDDSGEQDEEIMFSAVMPSVVNKSETP 765
            R    + + DE  + S      V + E P
Sbjct: 1322 RSSAQNKQVDENSLISTKEEPPVLEREAP 1350
>sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X))
            [Contains: MAP1 light chain LC1]
          Length = 2464

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 7/164 (4%)
 Frame = +1

Query: 310  NGKLESVIIDQEISQRKQL-FKPNLNEDKNLVPYFDEEETQLHXXXXXXXLNASLKSDQN 486
            + K E   +  E+++++    KP + +DK +     E +T+L            +K +  
Sbjct: 608  SSKEEQSPVKAEVAEKQATESKPKVTKDKVVKK---EIKTKLEEKKEEKPKKEVVKKEDK 664

Query: 487  CWYDPETMLKENEERFNVKKTWNSETMEEYTTQIDKSDPLLKEKMEYAERIAKEIENESN 666
                 +   ++ E +  +KK    E  +E   ++ K  PL   K E  +   KE++ E  
Sbjct: 665  TPLKKDEKPRKEEVKKEIKKEIKKEERKELKKEVKKETPLKDAKKEVKKEEKKEVKKEEK 724

Query: 667  MKRGRIPDDSGE------QDEEIMFSAVMPSVVNKSETPVATPI 780
              +  I   S +      Q +    SA+ P V  K E+    P+
Sbjct: 725  EPKKEIKKISKDIKKSTPQSDTKKPSALKPKVAKKEESTKKEPL 768
>sp|P40949|YQXM_BACSU Hypothetical protein yqxM
          Length = 253

 Score = 34.3 bits (77), Expect = 0.52
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +1

Query: 490 WYDPETMLKENEERFNVKKTWNSETMEEY-TTQIDKSDPLLKEKMEYAERIAKEIENESN 666
           W +P  + K +E+    KK   S+  +E  TTQ D  +  +KE+    E + KE E +S+
Sbjct: 179 WSEPMRLAKCDEKPTVPKKETKSDVKKENETTQKDIPEKTMKEETS-QEAVTKEKETQSD 237

Query: 667 MKRGRIPDDSGEQDEE 714
            K      +SGE+DE+
Sbjct: 238 QK------ESGEEDEK 247
>sp|P34216|YBE7_YEAST Hypothetical 150.8 kDa protein in SEC17-QCR1 intergenic region
          Length = 1381

 Score = 34.3 bits (77), Expect = 0.52
 Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 14/169 (8%)
 Frame = +1

Query: 232  IPIIKTQLEFKEVLLKDILLIKMLNGNGKLESVI-------------IDQEISQRKQLFK 372
            + +   QLE  +V + +  L K ++G G+  SV              ++++ +Q +  ++
Sbjct: 746  VDVNSKQLELNQVTVAN--LQKEIDGLGEKISVYLTKQKELNDYQKTVEEQHAQLQAKYQ 803

Query: 373  PNLNEDKNLVPYFDEEETQLHXXXXXXXLNASLKSDQNCWYDPETMLKENEERFNVKKTW 552
               N+D +L     + E QL         N  ++  +N ++   + L+E  +  + +K  
Sbjct: 804  DLSNKDTDLT----DREKQLEER------NRQIEEQENLYHQHVSKLQEMFDDLSQRKA- 852

Query: 553  NSETMEEYTTQIDKSDPLLKEK-MEYAERIAKEIENESNMKRGRIPDDS 696
                        +K+D  LKE+ +EYA  + +  E + N+  G++P+D+
Sbjct: 853  ----------SFEKADQELKERNIEYANNVRELSERQMNLAMGQLPEDA 891
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.313    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,595,405
Number of Sequences: 369166
Number of extensions: 1787554
Number of successful extensions: 4507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4499
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)