Planaria EST Database


DrC_02419

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02419
         (314 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O45499|RS26_CAEEL  40S ribosomal protein S26                    99   4e-21
sp|Q9GT45|RS26_ANOGA  40S ribosomal protein S26                    97   9e-21
sp|P49206|RS26_ARATH  40S ribosomal protein S26                    96   2e-20
sp|P41959|RS26_BRUPA  40S ribosomal protein S26                    96   3e-20
sp|P62856|RS26_RAT  40S ribosomal protein S26 >gi|51338651|s...    91   6e-19
sp|P13008|RS26_DROME  40S ribosomal protein S26 (DS31)             91   8e-19
sp|P30742|RS26_CRICR  40S ribosomal protein S26                    90   2e-18
sp|Q6Q312|RS26_SHEEP  40S ribosomal protein S26                    90   2e-18
sp|P27085|RS26_OCTVU  40S ribosomal protein S26                    89   2e-18
sp|P49171|RS26_PIG  40S ribosomal protein S26                      89   4e-18
>sp|O45499|RS26_CAEEL 40S ribosomal protein S26
          Length = 117

 Score = 98.6 bits (244), Expect = 4e-21
 Identities = 41/54 (75%), Positives = 50/54 (92%)
 Frame = +3

Query: 3   GKCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
           G+CCPKDK+IKKFVVRN+VEAAA+RD+ DAS Y+ Y LPKLY+K+HYCI+CAIH
Sbjct: 27  GRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIH 80
>sp|Q9GT45|RS26_ANOGA 40S ribosomal protein S26
          Length = 114

 Score = 97.4 bits (241), Expect = 9e-21
 Identities = 42/53 (79%), Positives = 50/53 (94%)
 Frame = +3

Query: 6   KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
           +C PKDK+IKKFV+RN+VEAAA+RD+SDASVYSSY LPKLY K+HYC+SCAIH
Sbjct: 27  RCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIH 79
>sp|P49206|RS26_ARATH 40S ribosomal protein S26
          Length = 131

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 44/85 (51%), Positives = 54/85 (63%)
 Frame = +3

Query: 3   GKCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIHXXXXXX 182
           GKCCPKDK+IK+F+VRN+VE AA+RD+ +ASVY  YTLPKLY K  YC+SCAIH      
Sbjct: 27  GKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRV 86

Query: 183 XXXXXXXXXXXXARFPRNQQAAVKP 257
                        RF R ++   KP
Sbjct: 87  RSRTNRRVRTPPPRFTRRKEDTPKP 111
>sp|P41959|RS26_BRUPA 40S ribosomal protein S26
          Length = 83

 Score = 95.9 bits (237), Expect = 3e-20
 Identities = 41/54 (75%), Positives = 49/54 (90%)
 Frame = +3

Query: 3   GKCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
           G+C PKDK+IKKFVVRN+V AAA+RD+SDAS Y SY LPKLY+K+HYC+SCAIH
Sbjct: 27  GRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIH 80
>sp|P62856|RS26_RAT 40S ribosomal protein S26
 sp|P62855|RS26_MOUSE 40S ribosomal protein S26
 sp|P61251|RS26_MACFA 40S ribosomal protein S26
 sp|P62854|RS26_HUMAN 40S ribosomal protein S26
          Length = 115

 Score = 91.3 bits (225), Expect = 6e-19
 Identities = 38/53 (71%), Positives = 49/53 (92%)
 Frame = +3

Query: 6   KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
           +C PKDK+IKKFV+RN+VEAAA+RD+S+ASV+ +Y LPKLY K+HYC+SCAIH
Sbjct: 28  RCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80
>sp|P13008|RS26_DROME 40S ribosomal protein S26 (DS31)
          Length = 114

 Score = 90.9 bits (224), Expect = 8e-19
 Identities = 37/53 (69%), Positives = 49/53 (92%)
 Frame = +3

Query: 6   KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
           +C PKDK+IKKFV+RN+VEAAA+RD+++AS++ SY LPKLY K+HYC+SCAIH
Sbjct: 28  RCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIH 80
>sp|P30742|RS26_CRICR 40S ribosomal protein S26
          Length = 115

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 37/53 (69%), Positives = 49/53 (92%)
 Frame = +3

Query: 6   KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
           +C PKDK+IKKFV+RN+VEAAA+RD+S+ASV+ +Y LPKLY ++HYC+SCAIH
Sbjct: 28  RCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSCAIH 80
>sp|Q6Q312|RS26_SHEEP 40S ribosomal protein S26
          Length = 115

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 37/53 (69%), Positives = 48/53 (90%)
 Frame = +3

Query: 6   KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
           +C PKDK+IKKFV+RN+VEAAA+RD+S+A V+ +Y LPKLY K+HYC+SCAIH
Sbjct: 28  RCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSCAIH 80
>sp|P27085|RS26_OCTVU 40S ribosomal protein S26
          Length = 127

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 39/53 (73%), Positives = 47/53 (88%)
 Frame = +3

Query: 6   KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
           +C PKDK+IKKFV+RN+VEAAA+RD+SDASVY  Y LPKLY K+ YC+SCAIH
Sbjct: 28  RCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSCAIH 80
>sp|P49171|RS26_PIG 40S ribosomal protein S26
          Length = 115

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 37/53 (69%), Positives = 48/53 (90%)
 Frame = +3

Query: 6   KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
           +C PKDK+IKKFV+RN+VEAAA+R +S+ASV+ +Y LPKLY K+HYC+SCAIH
Sbjct: 28  RCVPKDKAIKKFVIRNIVEAAAVRXISEASVFDAYVLPKLYVKLHYCVSCAIH 80
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,090,554
Number of Sequences: 369166
Number of extensions: 357057
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)