Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_P22
(314 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O45499|RS26_CAEEL 40S ribosomal protein S26 99 4e-21
sp|Q9GT45|RS26_ANOGA 40S ribosomal protein S26 97 9e-21
sp|P49206|RS26_ARATH 40S ribosomal protein S26 96 2e-20
sp|P41959|RS26_BRUPA 40S ribosomal protein S26 96 3e-20
sp|P62856|RS26_RAT 40S ribosomal protein S26 >gi|51338651|s... 91 6e-19
sp|P13008|RS26_DROME 40S ribosomal protein S26 (DS31) 91 8e-19
sp|P30742|RS26_CRICR 40S ribosomal protein S26 90 2e-18
sp|Q6Q312|RS26_SHEEP 40S ribosomal protein S26 90 2e-18
sp|P27085|RS26_OCTVU 40S ribosomal protein S26 89 2e-18
sp|P49171|RS26_PIG 40S ribosomal protein S26 89 4e-18
>sp|O45499|RS26_CAEEL 40S ribosomal protein S26
Length = 117
Score = 98.6 bits (244), Expect = 4e-21
Identities = 41/54 (75%), Positives = 50/54 (92%)
Frame = +3
Query: 3 GKCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
G+CCPKDK+IKKFVVRN+VEAAA+RD+ DAS Y+ Y LPKLY+K+HYCI+CAIH
Sbjct: 27 GRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIH 80
>sp|Q9GT45|RS26_ANOGA 40S ribosomal protein S26
Length = 114
Score = 97.4 bits (241), Expect = 9e-21
Identities = 42/53 (79%), Positives = 50/53 (94%)
Frame = +3
Query: 6 KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
+C PKDK+IKKFV+RN+VEAAA+RD+SDASVYSSY LPKLY K+HYC+SCAIH
Sbjct: 27 RCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIH 79
>sp|P49206|RS26_ARATH 40S ribosomal protein S26
Length = 131
Score = 96.3 bits (238), Expect = 2e-20
Identities = 44/85 (51%), Positives = 54/85 (63%)
Frame = +3
Query: 3 GKCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIHXXXXXX 182
GKCCPKDK+IK+F+VRN+VE AA+RD+ +ASVY YTLPKLY K YC+SCAIH
Sbjct: 27 GKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRV 86
Query: 183 XXXXXXXXXXXXARFPRNQQAAVKP 257
RF R ++ KP
Sbjct: 87 RSRTNRRVRTPPPRFTRRKEDTPKP 111
>sp|P41959|RS26_BRUPA 40S ribosomal protein S26
Length = 83
Score = 95.9 bits (237), Expect = 3e-20
Identities = 41/54 (75%), Positives = 49/54 (90%)
Frame = +3
Query: 3 GKCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
G+C PKDK+IKKFVVRN+V AAA+RD+SDAS Y SY LPKLY+K+HYC+SCAIH
Sbjct: 27 GRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIH 80
>sp|P62856|RS26_RAT 40S ribosomal protein S26
sp|P62855|RS26_MOUSE 40S ribosomal protein S26
sp|P61251|RS26_MACFA 40S ribosomal protein S26
sp|P62854|RS26_HUMAN 40S ribosomal protein S26
Length = 115
Score = 91.3 bits (225), Expect = 6e-19
Identities = 38/53 (71%), Positives = 49/53 (92%)
Frame = +3
Query: 6 KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
+C PKDK+IKKFV+RN+VEAAA+RD+S+ASV+ +Y LPKLY K+HYC+SCAIH
Sbjct: 28 RCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80
>sp|P13008|RS26_DROME 40S ribosomal protein S26 (DS31)
Length = 114
Score = 90.9 bits (224), Expect = 8e-19
Identities = 37/53 (69%), Positives = 49/53 (92%)
Frame = +3
Query: 6 KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
+C PKDK+IKKFV+RN+VEAAA+RD+++AS++ SY LPKLY K+HYC+SCAIH
Sbjct: 28 RCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIH 80
>sp|P30742|RS26_CRICR 40S ribosomal protein S26
Length = 115
Score = 89.7 bits (221), Expect = 2e-18
Identities = 37/53 (69%), Positives = 49/53 (92%)
Frame = +3
Query: 6 KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
+C PKDK+IKKFV+RN+VEAAA+RD+S+ASV+ +Y LPKLY ++HYC+SCAIH
Sbjct: 28 RCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSCAIH 80
>sp|Q6Q312|RS26_SHEEP 40S ribosomal protein S26
Length = 115
Score = 89.7 bits (221), Expect = 2e-18
Identities = 37/53 (69%), Positives = 48/53 (90%)
Frame = +3
Query: 6 KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
+C PKDK+IKKFV+RN+VEAAA+RD+S+A V+ +Y LPKLY K+HYC+SCAIH
Sbjct: 28 RCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSCAIH 80
>sp|P27085|RS26_OCTVU 40S ribosomal protein S26
Length = 127
Score = 89.4 bits (220), Expect = 2e-18
Identities = 39/53 (73%), Positives = 47/53 (88%)
Frame = +3
Query: 6 KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
+C PKDK+IKKFV+RN+VEAAA+RD+SDASVY Y LPKLY K+ YC+SCAIH
Sbjct: 28 RCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSCAIH 80
>sp|P49171|RS26_PIG 40S ribosomal protein S26
Length = 115
Score = 88.6 bits (218), Expect = 4e-18
Identities = 37/53 (69%), Positives = 48/53 (90%)
Frame = +3
Query: 6 KCCPKDKSIKKFVVRNVVEAAALRDMSDASVYSSYTLPKLYNKMHYCISCAIH 164
+C PKDK+IKKFV+RN+VEAAA+R +S+ASV+ +Y LPKLY K+HYC+SCAIH
Sbjct: 28 RCVPKDKAIKKFVIRNIVEAAAVRXISEASVFDAYVLPKLYVKLHYCVSCAIH 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,090,554
Number of Sequences: 369166
Number of extensions: 357057
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)