Planaria EST Database


DrC_02405

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02405
         (677 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38624|PSB6_YEAST  Proteasome component pre3 precursor (M...   235   7e-62
sp|P28072|PSB6_HUMAN  Proteasome subunit beta type 6 precurs...   234   2e-61
sp|P28073|PSB6_RAT  Proteasome subunit beta type 6 precursor...   230   3e-60
sp|Q60692|PSB6_MOUSE  Proteasome subunit beta type 6 precurs...   228   1e-59
sp|O43063|PSB6_SCHPO  Probable proteasome subunit beta type ...   211   1e-54
sp|Q8LD27|PSB6_ARATH  Proteasome subunit beta type 6 precurs...   196   5e-50
sp|P93395|PSB6_TOBAC  Proteasome subunit beta type 6 precurs...   196   6e-50
sp|P28077|PSB9_RAT  Proteasome subunit beta type 9 precursor...   187   2e-47
sp|O35522|PSB9_MUSMB  Proteasome subunit beta type 9 precurs...   185   1e-46
sp|P28076|PSB9_MOUSE  Proteasome subunit beta type 9 precurs...   183   3e-46
>sp|P38624|PSB6_YEAST Proteasome component pre3 precursor (Macropain subunit pre3)
           (Proteinase YSCE subunit pre3) (Multicatalytic
           endopeptidase complex subunit pre3)
          Length = 215

 Score =  235 bits (600), Expect = 7e-62
 Identities = 112/206 (54%), Positives = 160/206 (77%), Gaps = 1/206 (0%)
 Frame = +2

Query: 26  MNNPGKG-ISMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCCRSGS 202
           +N   KG +S+GT+++A  F  GV++GADSRT++G Y++NRV+DKLT+V+D+I+CCRSGS
Sbjct: 8   INRLKKGEVSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGS 67

Query: 203 SADTQALTDVVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYDDDNG 382
           +ADTQA+ D+V+YHLEL+++ Y  P S   AA++FK +CY+ +D LTAGIIVAGYDD N 
Sbjct: 68  AADTQAIADIVQYHLELYTSQYGTP-STETAASVFKELCYENKDNLTAGIIVAGYDDKNK 126

Query: 383 GQIFTIPLGGMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAIIRDG 562
           G+++TIPLGG + K   + +GSGST+I G  D+ ++ENM++EE + F+K S+  AI  DG
Sbjct: 127 GEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDG 186

Query: 563 SSGGVIRLAVIGKDGVKRFVFTEDEY 640
           SSGGVIR+ V+   GV+R +F  DEY
Sbjct: 187 SSGGVIRMVVLTAAGVERLIFYPDEY 212
>sp|P28072|PSB6_HUMAN Proteasome subunit beta type 6 precursor (Proteasome delta chain)
           (Macropain delta chain) (Multicatalytic endopeptidase
           complex delta chain) (Proteasome subunit Y)
          Length = 239

 Score =  234 bits (596), Expect = 2e-61
 Identities = 110/197 (55%), Positives = 150/197 (76%)
 Frame = +2

Query: 47  ISMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCCRSGSSADTQALT 226
           +S GTT++A  FDGGVV+GADSRT++G+Y++NRV+DKLT ++DRI+CCRSGS+ADTQA+ 
Sbjct: 31  VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90

Query: 227 DVVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYDDDNGGQIFTIPL 406
           D V Y L  HS   N P  V  AA+LFK MCY YR+ L AGII+AG+D   GGQ++++P+
Sbjct: 91  DAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 150

Query: 407 GGMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAIIRDGSSGGVIRL 586
           GGM+ +Q+ +  GSGS+YI G +D  Y+E MT+EEC++F   ++  A+ RDGSSGGVIRL
Sbjct: 151 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 210

Query: 587 AVIGKDGVKRFVFTEDE 637
           A I + GV+R V   D+
Sbjct: 211 AAIAESGVERQVLLGDQ 227
>sp|P28073|PSB6_RAT Proteasome subunit beta type 6 precursor (Proteasome delta chain)
           (Macropain delta chain) (Multicatalytic endopeptidase
           complex delta chain) (Proteasome subunit Y) (Proteasome
           chain 5)
          Length = 237

 Score =  230 bits (586), Expect = 3e-60
 Identities = 108/197 (54%), Positives = 149/197 (75%)
 Frame = +2

Query: 47  ISMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCCRSGSSADTQALT 226
           +S GTT++A  FDGGVV+GADSRT++G+Y++NRV+DKLT ++D I+CCRSGS+ADTQA+ 
Sbjct: 29  VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 88

Query: 227 DVVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYDDDNGGQIFTIPL 406
           D V Y L  HS   N P  V  AA+LFK MCY YR+ L AGII+AG+D   GGQ++++P+
Sbjct: 89  DAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 148

Query: 407 GGMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAIIRDGSSGGVIRL 586
           GGM+ +Q+ +  GSGS+YI G +D  Y+E MT++EC++F   ++  A+ RDGSSGGVIRL
Sbjct: 149 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRL 208

Query: 587 AVIGKDGVKRFVFTEDE 637
           A I + GV+R V   D+
Sbjct: 209 AAIQQSGVERQVLLGDQ 225
>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type 6 precursor (Proteasome delta chain)
           (Macropain delta chain) (Multicatalytic endopeptidase
           complex delta chain) (Proteasome subunit Y)
          Length = 238

 Score =  228 bits (581), Expect = 1e-59
 Identities = 107/197 (54%), Positives = 149/197 (75%)
 Frame = +2

Query: 47  ISMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCCRSGSSADTQALT 226
           +S GTT++A  F+GGVV+GADSRT++G+Y++NRV+DKLT ++D I+CCRSGS+ADTQA+ 
Sbjct: 30  VSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 89

Query: 227 DVVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYDDDNGGQIFTIPL 406
           D V Y L  HS   N P  V  AA+LFK MCY YR+ L AGII+AG+D   GGQ++++P+
Sbjct: 90  DAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 149

Query: 407 GGMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAIIRDGSSGGVIRL 586
           GGM+ +Q+ +  GSGS+YI G +D  Y+E MT++EC++F   ++  A+ RDGSSGGVIRL
Sbjct: 150 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRL 209

Query: 587 AVIGKDGVKRFVFTEDE 637
           A I + GV+R V   D+
Sbjct: 210 AAIQESGVERQVLLGDQ 226
>sp|O43063|PSB6_SCHPO Probable proteasome subunit beta type 6 precursor
          Length = 226

 Score =  211 bits (537), Expect = 1e-54
 Identities = 102/208 (49%), Positives = 147/208 (70%), Gaps = 1/208 (0%)
 Frame = +2

Query: 14  INFIMNNPGKG-ISMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCC 190
           +N  +N   KG I MGTT+ A  +  GV++ ADSRT+ G Y++NRV+DKLTQ+ D I+CC
Sbjct: 9   MNVDINAIKKGEIRMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCC 68

Query: 191 RSGSSADTQALTDVVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYD 370
           RSGS+ADTQ + D++KY+L ++   +    SV  AATL   MCY  ++ L+AG+IVAGYD
Sbjct: 69  RSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYD 128

Query: 371 DDNGGQIFTIPLGGMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAI 550
           +  GG +++IPLGG + KQ ++  GSGS +I G  D  ++ENMT+EE ++F+K +V  A+
Sbjct: 129 EKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAM 188

Query: 551 IRDGSSGGVIRLAVIGKDGVKRFVFTED 634
            RDGSSGG IR+ ++ KDG++R  F  D
Sbjct: 189 ERDGSSGGTIRMVILNKDGMERKFFAID 216
>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type 6 precursor (Proteasome subunit beta
           type 1) (20S proteasome beta subunit A-1) (Proteasome
           component CD)
          Length = 233

 Score =  196 bits (498), Expect = 5e-50
 Identities = 91/196 (46%), Positives = 137/196 (69%)
 Frame = +2

Query: 50  SMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCCRSGSSADTQALTD 229
           SMGTT++   ++GGVV+GADSRTS+G YV+NR SDK+TQ+ D +Y CRSGS+AD+Q ++D
Sbjct: 10  SMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSD 69

Query: 230 VVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYDDDNGGQIFTIPLG 409
            V+Y L  H+  + +P +V  +A L + + Y+ ++ L  G+IV G+D   GG+I+ IPLG
Sbjct: 70  YVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLG 129

Query: 410 GMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAIIRDGSSGGVIRLA 589
           G + +Q  +  GSGS+Y+ G  D+ +K+NMT+EE  + V  +V  AI RDG+SGGV+R  
Sbjct: 130 GTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTV 189

Query: 590 VIGKDGVKRFVFTEDE 637
           +I  +GV R  +  D+
Sbjct: 190 IINSEGVTRNFYPGDK 205
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type 6 precursor (Proteasome delta chain)
           (Tobacco cryptogein-induced protein 7) (tcI 7)
          Length = 234

 Score =  196 bits (497), Expect = 6e-50
 Identities = 93/195 (47%), Positives = 134/195 (68%)
 Frame = +2

Query: 50  SMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCCRSGSSADTQALTD 229
           SMGTT++   ++GGVV+GADSRTS+G YV+NR SDK+TQ+ D +Y CRSGS+AD+Q ++D
Sbjct: 11  SMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSD 70

Query: 230 VVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYDDDNGGQIFTIPLG 409
            V+Y L  H+    +P +V  AA L + + Y+ +D+L  G+I+ G+D   GG+I+ IP G
Sbjct: 71  YVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPG 130

Query: 410 GMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAIIRDGSSGGVIRLA 589
           G + +Q  +  GSGS+Y+ G  D+ +KE MT+EE  K V  +V  AI RDG+SGGV+R  
Sbjct: 131 GTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVVRTV 190

Query: 590 VIGKDGVKRFVFTED 634
            I KDG  R  ++ D
Sbjct: 191 TINKDGATRKFYSGD 205
>sp|P28077|PSB9_RAT Proteasome subunit beta type 9 precursor (Proteasome chain 7)
           (Macropain chain 7) (Multicatalytic endopeptidase
           complex chain 7) (RING12 protein) (Low molecular mass
           protein 2)
          Length = 219

 Score =  187 bits (475), Expect = 2e-47
 Identities = 98/197 (49%), Positives = 127/197 (64%)
 Frame = +2

Query: 47  ISMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCCRSGSSADTQALT 226
           +  GTT++A  FDGGVV+G+DSR S+G  V NRV DKL+ ++ RIYC  SGS+AD QA+ 
Sbjct: 17  VHTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIA 76

Query: 227 DVVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYDDDNGGQIFTIPL 406
           D+  Y LELH      P  VL AA + KN+ Y YR+ L A ++VAG+D   GGQ++   +
Sbjct: 77  DMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYG-TM 135

Query: 407 GGMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAIIRDGSSGGVIRL 586
           GGM+ +Q  +  GSGSTYI G +D  YK  MT EEC +F   ++  A+ RDGSSGGVI L
Sbjct: 136 GGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIYL 195

Query: 587 AVIGKDGVKRFVFTEDE 637
             I  DGV   V   DE
Sbjct: 196 VTITADGVDHRVILGDE 212
>sp|O35522|PSB9_MUSMB Proteasome subunit beta type 9 precursor (Proteasome chain 7)
           (Macropain chain 7) (Multicatalytic endopeptidase
           complex chain 7) (RING12 protein) (Low molecular mass
           protein 2)
          Length = 219

 Score =  185 bits (469), Expect = 1e-46
 Identities = 98/197 (49%), Positives = 128/197 (64%)
 Frame = +2

Query: 47  ISMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCCRSGSSADTQALT 226
           +  GTT++A  FDGGVV+G+DSR S+GT V NRV DKL+ ++ RI+C  SGS+AD QA+ 
Sbjct: 17  VHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIA 76

Query: 227 DVVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYDDDNGGQIFTIPL 406
           D+  Y LELH      P  VL AA + KN+ Y YR+ L A +IVAG+D   GGQ++   +
Sbjct: 77  DMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYG-TM 135

Query: 407 GGMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAIIRDGSSGGVIRL 586
           GGM+ +Q  + SGSGS+YI G +D  YK  MT EEC +F   ++  A+ RDGSSGGVI L
Sbjct: 136 GGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYL 195

Query: 587 AVIGKDGVKRFVFTEDE 637
             I   GV   V   DE
Sbjct: 196 VTITAAGVDHRVILGDE 212
>sp|P28076|PSB9_MOUSE Proteasome subunit beta type 9 precursor (Proteasome chain 7)
           (Macropain chain 7) (Multicatalytic endopeptidase
           complex chain 7) (RING12 protein) (Low molecular mass
           protein 2) (LMP-2d)
          Length = 219

 Score =  183 bits (465), Expect = 3e-46
 Identities = 97/197 (49%), Positives = 127/197 (64%)
 Frame = +2

Query: 47  ISMGTTLVAAVFDGGVVIGADSRTSSGTYVSNRVSDKLTQVNDRIYCCRSGSSADTQALT 226
           +  GTT++A  FDGGVV+G+DSR S+GT V NRV DKL+ ++ RI+C  SGS+AD QA+ 
Sbjct: 17  VHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIA 76

Query: 227 DVVKYHLELHSNMYNRPVSVLHAATLFKNMCYDYRDQLTAGIIVAGYDDDNGGQIFTIPL 406
           D+  Y LELH      P  VL AA + KN+ Y YR+ L A +IVAG+D   GGQ++   +
Sbjct: 77  DMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYG-TM 135

Query: 407 GGMIKKQNVSCSGSGSTYILGLMDEVYKENMTEEECIKFVKVSVKHAIIRDGSSGGVIRL 586
           GGM+ +Q  +  GSGS+YI G +D  YK  MT EEC +F   ++  A+ RDGSSGGVI L
Sbjct: 136 GGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYL 195

Query: 587 AVIGKDGVKRFVFTEDE 637
             I   GV   V   DE
Sbjct: 196 VTITAAGVDHRVILGDE 212
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,331,723
Number of Sequences: 369166
Number of extensions: 1360491
Number of successful extensions: 3918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3864
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)