Planaria EST Database


DrC_02402

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02402
         (741 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12213|CEMA_TOBAC  Chloroplast envelope membrane protein        31   4.0  
sp|Q8S8W5|CEMA_ATRBE  Chloroplast envelope membrane protein        31   4.0  
sp|P58145|ROAA_ASTLO  Ribosomal operon-associated A protein ...    30   5.2  
sp|Q5HVQ7|SYA_CAMJR  Alanyl-tRNA synthetase (Alanine--tRNA l...    30   8.8  
sp|Q9PI05|SYA_CAMJE  Alanyl-tRNA synthetase (Alanine--tRNA l...    30   8.8  
>sp|P12213|CEMA_TOBAC Chloroplast envelope membrane protein
          Length = 229

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -3

Query: 292 FSEVPLDVFWIYVKKEYPRI----SDKAILTLLPFSTTYVCEQTFSTLVLIKNDKRSCLK 125
           +SE  L+ F I + KE  ++    ++  I T+L FST  +C    S   ++ N+K   L 
Sbjct: 76  YSETHLEEFGIGIHKETIQLIKIQNENRIHTILHFSTNIICFIILSGYSILGNEKLVILN 135

Query: 124 DLDQELRVALSN 89
              QE    LS+
Sbjct: 136 SWAQEFLYNLSD 147
>sp|Q8S8W5|CEMA_ATRBE Chloroplast envelope membrane protein
          Length = 229

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -3

Query: 292 FSEVPLDVFWIYVKKEYPRI----SDKAILTLLPFSTTYVCEQTFSTLVLIKNDKRSCLK 125
           +SE  L+ F I + KE  ++    ++  I T+L FST  +C    S   ++ N+K   L 
Sbjct: 76  YSETHLEEFGIGIHKETIQLIKIQNENRIHTILHFSTNIICFIILSGYSILGNEKLVILN 135

Query: 124 DLDQELRVALSN 89
              QE    LS+
Sbjct: 136 SWAQEFLYNLSD 147
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
          Length = 519

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
 Frame = +3

Query: 441 WKNVKHNVIDGGTLVFGSRHSSVHWLRSTGIDYKSI-----L*F------LINIRISLIN 587
           W  +K N++D    +F   H  +H L S  ++++SI     L F       +++R S+ N
Sbjct: 15  WDFIKWNLVDNIISLF---HHEIHIL-SKNLNFRSIKKKQHLLFKSFYTRFVSVRDSVDN 70

Query: 588 NFE*ISNGLRSYNVLIKLIFLIFKVNLYFQKYLH 689
           NF   SN + S      + FL +K N ++  + +
Sbjct: 71  NFFFKSNIISSKEKFFIVFFLCYKRNFFYNLFFY 104
>sp|Q5HVQ7|SYA_CAMJR Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
          Length = 842

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 153 INTRVEKVCSHTYVVENGSSVKIALSEMRGYSFL 254
           I   + K+C+ TYV E+G+S ++    +R   FL
Sbjct: 247 IINEISKLCNKTYVYESGASFRVIADHIRSSVFL 280
>sp|Q9PI05|SYA_CAMJE Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
          Length = 842

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 153 INTRVEKVCSHTYVVENGSSVKIALSEMRGYSFL 254
           I   + K+C+ TYV E+G+S ++    +R   FL
Sbjct: 247 IINEISKLCNKTYVYESGASFRVIADHIRSSVFL 280
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,597,786
Number of Sequences: 369166
Number of extensions: 1468026
Number of successful extensions: 3360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3358
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)