Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_M22
(741 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P12213|CEMA_TOBAC Chloroplast envelope membrane protein 31 4.0
sp|Q8S8W5|CEMA_ATRBE Chloroplast envelope membrane protein 31 4.0
sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein ... 30 5.2
sp|Q5HVQ7|SYA_CAMJR Alanyl-tRNA synthetase (Alanine--tRNA l... 30 8.8
sp|Q9PI05|SYA_CAMJE Alanyl-tRNA synthetase (Alanine--tRNA l... 30 8.8
>sp|P12213|CEMA_TOBAC Chloroplast envelope membrane protein
Length = 229
Score = 30.8 bits (68), Expect = 4.0
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -3
Query: 292 FSEVPLDVFWIYVKKEYPRI----SDKAILTLLPFSTTYVCEQTFSTLVLIKNDKRSCLK 125
+SE L+ F I + KE ++ ++ I T+L FST +C S ++ N+K L
Sbjct: 76 YSETHLEEFGIGIHKETIQLIKIQNENRIHTILHFSTNIICFIILSGYSILGNEKLVILN 135
Query: 124 DLDQELRVALSN 89
QE LS+
Sbjct: 136 SWAQEFLYNLSD 147
>sp|Q8S8W5|CEMA_ATRBE Chloroplast envelope membrane protein
Length = 229
Score = 30.8 bits (68), Expect = 4.0
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -3
Query: 292 FSEVPLDVFWIYVKKEYPRI----SDKAILTLLPFSTTYVCEQTFSTLVLIKNDKRSCLK 125
+SE L+ F I + KE ++ ++ I T+L FST +C S ++ N+K L
Sbjct: 76 YSETHLEEFGIGIHKETIQLIKIQNENRIHTILHFSTNIICFIILSGYSILGNEKLVILN 135
Query: 124 DLDQELRVALSN 89
QE LS+
Sbjct: 136 SWAQEFLYNLSD 147
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
Length = 519
Score = 30.4 bits (67), Expect = 5.2
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Frame = +3
Query: 441 WKNVKHNVIDGGTLVFGSRHSSVHWLRSTGIDYKSI-----L*F------LINIRISLIN 587
W +K N++D +F H +H L S ++++SI L F +++R S+ N
Sbjct: 15 WDFIKWNLVDNIISLF---HHEIHIL-SKNLNFRSIKKKQHLLFKSFYTRFVSVRDSVDN 70
Query: 588 NFE*ISNGLRSYNVLIKLIFLIFKVNLYFQKYLH 689
NF SN + S + FL +K N ++ + +
Sbjct: 71 NFFFKSNIISSKEKFFIVFFLCYKRNFFYNLFFY 104
>sp|Q5HVQ7|SYA_CAMJR Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 842
Score = 29.6 bits (65), Expect = 8.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 153 INTRVEKVCSHTYVVENGSSVKIALSEMRGYSFL 254
I + K+C+ TYV E+G+S ++ +R FL
Sbjct: 247 IINEISKLCNKTYVYESGASFRVIADHIRSSVFL 280
>sp|Q9PI05|SYA_CAMJE Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 842
Score = 29.6 bits (65), Expect = 8.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 153 INTRVEKVCSHTYVVENGSSVKIALSEMRGYSFL 254
I + K+C+ TYV E+G+S ++ +R FL
Sbjct: 247 IINEISKLCNKTYVYESGASFRVIADHIRSSVFL 280
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,597,786
Number of Sequences: 369166
Number of extensions: 1468026
Number of successful extensions: 3360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3358
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)