Planaria EST Database


DrC_02384

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02384
         (908 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29400|CO4A5_HUMAN  Collagen alpha 5(IV) chain precursor       199   9e-51
sp|Q28247|CO4A5_CANFA  Collagen alpha 5(IV) chain precursor       199   1e-50
sp|P02463|CO4A1_MOUSE  Collagen alpha 1(IV) chain precursor       197   4e-50
sp|P17140|CO4A2_CAEEL  Collagen alpha 2(IV) chain precursor ...   197   4e-50
sp|P27393|CO4A2_ASCSU  Collagen alpha 2(IV) chain precursor       194   2e-49
sp|P02462|CO4A1_HUMAN  Collagen alpha 1(IV) chain precursor       192   8e-49
sp|Q01955|CO4A3_HUMAN  Collagen alpha 3(IV) chain precursor ...   187   5e-47
sp|P17139|CO4A1_CAEEL  Collagen alpha 1(IV) chain precursor       186   1e-46
sp|P08122|CO4A2_MOUSE  Collagen alpha 2(IV) chain precursor       185   1e-46
sp|Q28084|CO4A3_BOVIN  Collagen alpha 3(IV) chain                 185   2e-46
>sp|P29400|CO4A5_HUMAN Collagen alpha 5(IV) chain precursor
          Length = 1685

 Score =  199 bits (506), Expect = 9e-51
 Identities = 108/269 (40%), Positives = 149/269 (55%), Gaps = 16/269 (5%)
 Frame = +2

Query: 71   EKGLPGDVGDRGVDGSIGFGD--------------NGFLYATHSQSKDSPICPDGGFPLY 208
            + GLPG  G RG+DG  G                 +GFL   HSQ+ D+P CP G   +Y
Sbjct: 1425 DPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGTLQVY 1484

Query: 209  SGYSLLAIHGDIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYW 388
             G+SLL + G+  +   DLGT GSCL+ FST+PF+ C +         C    RN  SYW
Sbjct: 1485 EGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNI------NNVCNFASRNDYSYW 1538

Query: 389  LSTLQSYMSSPQP--PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAG 562
            LST +    S QP     +  +ISRC+VC+  + V+A HSQ    Q+  CP GW  LW G
Sbjct: 1539 LSTPEPMPMSMQPLKGQSIQPFISRCAVCEAPAVVIAVHSQTI--QIPHCPQGWDSLWIG 1596

Query: 563  FSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSE 742
            +SF M   A   GS Q  +SPGSCL+ FR+ PFIEC+ + + CN++ +  S+++  VD  
Sbjct: 1597 YSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT-CNYYANSYSFWLATVDVS 1655

Query: 743  NQFVKAQGKILKSQTDIMNSISKCVVCQR 829
            + F K Q + LK+  D+   IS+C VC +
Sbjct: 1656 DMFSKPQSETLKA-GDLRTRISRCQVCMK 1683
>sp|Q28247|CO4A5_CANFA Collagen alpha 5(IV) chain precursor
          Length = 1691

 Score =  199 bits (505), Expect = 1e-50
 Identities = 107/269 (39%), Positives = 150/269 (55%), Gaps = 16/269 (5%)
 Frame = +2

Query: 71   EKGLPGDVGDRGVDGSIGFGD--------------NGFLYATHSQSKDSPICPDGGFPLY 208
            + GLPG  G RG+DG  G                 +GFL   HSQ+ D+P CP G   +Y
Sbjct: 1431 DPGLPGQPGTRGLDGPPGPDGMQGPPGPPGTSSIAHGFLITRHSQTTDAPQCPHGTVQIY 1490

Query: 209  SGYSLLAIHGDIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYW 388
             G+SLL + G+  +   DLGT GSCL+ FST+PF+ C +         C    RN  SYW
Sbjct: 1491 EGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNV------CNFASRNDYSYW 1544

Query: 389  LSTLQSYMSSPQP--PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAG 562
            LST +    S +P     +  +ISRC+VC+  + V+A HSQ    Q+  CP+GW  LW G
Sbjct: 1545 LSTPEPMPMSMEPLKGQSIQPFISRCAVCEAPAVVIAVHSQTI--QIPHCPHGWDSLWIG 1602

Query: 563  FSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSE 742
            +SF M   A   GS Q  +SPGSCL+ FR+ PFIEC+ + + CN++ +  S+++  VD  
Sbjct: 1603 YSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT-CNYYANSYSFWLATVDVS 1661

Query: 743  NQFVKAQGKILKSQTDIMNSISKCVVCQR 829
            + F K Q + LK+  D+   IS+C VC +
Sbjct: 1662 DMFSKPQSETLKA-GDLRTRISRCQVCMK 1689
>sp|P02463|CO4A1_MOUSE Collagen alpha 1(IV) chain precursor
          Length = 1669

 Score =  197 bits (500), Expect = 4e-50
 Identities = 106/259 (40%), Positives = 147/259 (56%), Gaps = 7/259 (2%)
 Frame = +2

Query: 74   KGLPGDVGDRGVDGSIG-----FGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHG 238
            +G PG  G  G+ GS+G       D+GFL   HSQ+ D P+CP G   LY GYSLL + G
Sbjct: 1419 RGFPGPPGPDGLPGSMGPPGTPSVDHGFLVTRHSQTTDDPLCPPGTKILYHGYSLLYVQG 1478

Query: 239  DIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSS 418
            +  +   DLGT GSCL+ FST+PF+ C +         C    RN  SYWLST +    S
Sbjct: 1479 NERAHGQDLGTAGSCLRKFSTMPFLFCNI------NNVCNFASRNDYSYWLSTPEPMPMS 1532

Query: 419  PQPPS--KMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQAS 592
              P S   +  +ISRC+VC+  + VMA HSQ    Q+ +CP GW  LW G+SF M   A 
Sbjct: 1533 MAPISGDNIRPFISRCAVCEAPAMVMAVHSQTI--QIPQCPNGWSSLWIGYSFVMHTSAG 1590

Query: 593  RSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKI 772
              GS Q  +SPGSCL+ FR+ PFIEC+ + + CN++ +  S+++  ++    F K     
Sbjct: 1591 AEGSGQALASPGSCLEEFRSAPFIECHGRGT-CNYYANAYSFWLATIERSEMFKKPTPST 1649

Query: 773  LKSQTDIMNSISKCVVCQR 829
            LK+  ++   +S+C VC R
Sbjct: 1650 LKA-GELRTHVSRCQVCMR 1667
>sp|P17140|CO4A2_CAEEL Collagen alpha 2(IV) chain precursor (Lethal protein 2)
          Length = 1758

 Score =  197 bits (500), Expect = 4e-50
 Identities = 101/253 (39%), Positives = 146/253 (57%), Gaps = 4/253 (1%)
 Frame = +2

Query: 77   GLPGDVGDRGVDGSIGFGD----NGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDI 244
            G PG  G  G+ G+ G       +GF+   HSQ+ + P CP+G   L+ GYSLL I G+ 
Sbjct: 1507 GQPGGPGAPGLPGAPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNE 1566

Query: 245  DSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSSPQ 424
             S   DLG  GSCL+ FST+PF+ C       +   C    RN +SYWLST ++    P 
Sbjct: 1567 KSHNQDLGHAGSCLQRFSTMPFLFCD------FNNVCNYASRNEKSYWLSTSEAIPMMPV 1620

Query: 425  PPSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGS 604
               +++ YISRC+VC+  +  +A HSQ    Q+  CP GW  LW G+SF M   A   G 
Sbjct: 1621 NEREIEPYISRCAVCEAPANTIAVHSQTI--QIPNCPAGWSSLWIGYSFAMHTGAGAEGG 1678

Query: 605  NQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQ 784
             Q  SSPGSCL+ FRA PFIECN    +C+++ +  S+++T +D++++F   + + LKS 
Sbjct: 1679 GQSPSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKS- 1737

Query: 785  TDIMNSISKCVVC 823
             ++   +S+C VC
Sbjct: 1738 GNLRTRVSRCQVC 1750

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
 Frame = +2

Query: 485  VMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFI 664
            V+  HSQ ++  + +CP G  KLW G+S  + ++ +    NQ     GSCL+ F  +PF+
Sbjct: 1533 VLVKHSQTTE--VPRCPEGQTKLWDGYSL-LYIEGNEKSHNQDLGHAGSCLQRFSTMPFL 1589

Query: 665  ECNNQNSNCNHW-RDGISYYMTAVDSENQFVKAQGKILKSQTDIMNSISKCVVCQRDLNI 841
             C+  N  CN+  R+  SY+++  +       A   +  ++ +I   IS+C VC+   N 
Sbjct: 1590 FCDFNNV-CNYASRNEKSYWLSTSE-------AIPMMPVNEREIEPYISRCAVCEAPANT 1641

Query: 842  V 844
            +
Sbjct: 1642 I 1642
>sp|P27393|CO4A2_ASCSU Collagen alpha 2(IV) chain precursor
          Length = 1763

 Score =  194 bits (494), Expect = 2e-49
 Identities = 104/255 (40%), Positives = 141/255 (55%)
 Frame = +2

Query: 77   GLPGDVGDRGVDGSIGFGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDIDSVT 256
            GLPG  G  G  G   + D GFL   HSQ+ + P CP G   L+ GYSLL I G+  S  
Sbjct: 1515 GLPGPSGPPGPPGP-SYKD-GFLLVKHSQTSEVPQCPPGMVKLWDGYSLLYIEGNEKSHN 1572

Query: 257  MDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSSPQPPSK 436
             DLG  GSCL  FST+PF+ C +         C    RN +SYWLST       P     
Sbjct: 1573 QDLGHAGSCLSRFSTMPFLFCDVNNV------CNYASRNDKSYWLSTTAPIPMMPVSEGG 1626

Query: 437  MDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSNQPF 616
            ++ YISRC+VC+  + V+A HSQ    Q+  CP GW  LW G+SF M   A   G  Q  
Sbjct: 1627 IEPYISRCAVCEAPANVIAVHSQTI--QIPNCPNGWNSLWIGYSFAMHTGAGAEGGGQSL 1684

Query: 617  SSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQTDIM 796
            SSPGSCL+ FRA PFIECN     C+++ +  S+++T ++ + QF   + + LK+ + + 
Sbjct: 1685 SSPGSCLEDFRATPFIECNGARGTCHYFANKFSFWLTTIEDDQQFRIPESETLKAGS-LR 1743

Query: 797  NSISKCVVCQRDLNI 841
              +S+C VC R  ++
Sbjct: 1744 TRVSRCQVCIRSPDV 1758

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
 Frame = +2

Query: 497  HSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFIECNN 676
            HSQ S+  + +CP G  KLW G+S  + ++ +    NQ     GSCL  F  +PF+ C+ 
Sbjct: 1539 HSQTSE--VPQCPPGMVKLWDGYSL-LYIEGNEKSHNQDLGHAGSCLSRFSTMPFLFCD- 1594

Query: 677  QNSNCNHW-RDGISYYMTAVDSENQFVKAQGKILKSQTDIMNSISKCVVCQRDLNIV 844
             N+ CN+  R+  SY+++          ++G        I   IS+C VC+   N++
Sbjct: 1595 VNNVCNYASRNDKSYWLSTTAPIPMMPVSEG-------GIEPYISRCAVCEAPANVI 1644
>sp|P02462|CO4A1_HUMAN Collagen alpha 1(IV) chain precursor
          Length = 1669

 Score =  192 bits (489), Expect = 8e-49
 Identities = 105/259 (40%), Positives = 144/259 (55%), Gaps = 7/259 (2%)
 Frame = +2

Query: 74   KGLPGDVGDRGVDGSIG-----FGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHG 238
            +G PG  G  G+ GS+G       D+GFL   HSQ+ D P CP G   LY GYSLL + G
Sbjct: 1419 RGFPGPPGPDGLPGSMGPPGTPSVDHGFLVTRHSQTIDDPQCPSGTKILYHGYSLLYVQG 1478

Query: 239  DIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSS 418
            +  +   DLGT GSCL+ FST+PF+ C +         C    RN  SYWLST +    S
Sbjct: 1479 NERAHGQDLGTAGSCLRKFSTMPFLFCNI------NNVCNFASRNDYSYWLSTPEPMPMS 1532

Query: 419  PQP--PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQAS 592
              P     +  +ISRC+VC+  + VMA HSQ    Q+  CP GW  LW G+SF M   A 
Sbjct: 1533 MAPITGENIRPFISRCAVCEAPAMVMAVHSQTI--QIPPCPSGWSSLWIGYSFVMHTSAG 1590

Query: 593  RSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKI 772
              GS Q  +SPGSCL+ FR+ PFIEC+ + + CN++ +  S+++  ++    F K     
Sbjct: 1591 AEGSGQALASPGSCLEEFRSAPFIECHGRGT-CNYYANAYSFWLATIERSEMFKKPTPST 1649

Query: 773  LKSQTDIMNSISKCVVCQR 829
            LK+  ++   +S+C VC R
Sbjct: 1650 LKA-GELRTHVSRCQVCMR 1667
>sp|Q01955|CO4A3_HUMAN Collagen alpha 3(IV) chain precursor (Goodpasture antigen)
          Length = 1670

 Score =  187 bits (474), Expect = 5e-47
 Identities = 101/254 (39%), Positives = 147/254 (57%), Gaps = 3/254 (1%)
 Frame = +2

Query: 77   GLPGDVGDRGVDGSIG-FGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDIDSV 253
            GLPG  G RG  GS   +   GF++  HSQ+   P CP+G  PLYSG+S L + G+  + 
Sbjct: 1424 GLPGLKGKRGDSGSPATWTTRGFVFTRHSQTTAIPSCPEGTVPLYSGFSFLFVQGNQRAH 1483

Query: 254  TMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLST--LQSYMSSPQP 427
              DLGT GSCL+ F+T+PF+ C +         C    RN  SYWLST  L     +P  
Sbjct: 1484 GQDLGTLGSCLQRFTTMPFLFCNV------NDVCNFASRNDYSYWLSTPALMPMNMAPIT 1537

Query: 428  PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSN 607
               ++ YISRC+VC+  +  +A HSQ +D  +  CP+GW  LW GFSF M   A   G+ 
Sbjct: 1538 GRALEPYISRCTVCEGPAIAIAVHSQTTD--IPPCPHGWISLWKGFSFIMFTSAGSEGTG 1595

Query: 608  QPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQT 787
            Q  +SPGSCL+ FRA PF+EC+ + + CN++ +  S+++ +++ E  F K     +K+  
Sbjct: 1596 QALASPGSCLEEFRASPFLECHGRGT-CNYYSNSYSFWLASLNPERMFRKPIPSTVKA-G 1653

Query: 788  DIMNSISKCVVCQR 829
            ++   IS+C VC +
Sbjct: 1654 ELEKIISRCQVCMK 1667

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
 Frame = +2

Query: 149  ATHSQSKDSPICPDGGFPLYSGYSLLAI-HGDIDSVTMDLGTPGSCLKNFSTIPFVNCFL 325
            A HSQ+ D P CP G   L+ G+S +       +     L +PGSCL+ F   PF+ C  
Sbjct: 1559 AVHSQTTDIPPCPHGWISLWKGFSFIMFTSAGSEGTGQALASPGSCLEEFRASPFLECH- 1617

Query: 326  ERNTFYGGRCQINM-RNSRSYWLSTLQSYMSSPQP-PS-----KMDDYISRCSVCQTK 478
                   GR   N   NS S+WL++L       +P PS     +++  ISRC VC  K
Sbjct: 1618 -------GRGTCNYYSNSYSFWLASLNPERMFRKPIPSTVKAGELEKIISRCQVCMKK 1668
>sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor
          Length = 1759

 Score =  186 bits (471), Expect = 1e-46
 Identities = 100/274 (36%), Positives = 149/274 (54%), Gaps = 22/274 (8%)
 Frame = +2

Query: 77   GLPGDVGDRGVDGSIGFGDN--------------------GFLYATHSQSKDSPICPDGG 196
            G+PG  GD+G  G+ G   N                    GF +A HSQ+   P CP G 
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPGGWAPSRGFTFAKHSQTTAVPQCPPGA 1554

Query: 197  FPLYSGYSLLAIHGDIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNS 376
              L+ GYSLL + G+  +   DLG PGSCL  F+T+PF+ C +         C ++ RN 
Sbjct: 1555 SQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMN------SVCHVSSRND 1608

Query: 377  RSYWLSTLQSY--MSSPQPPSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQK 550
             S+WLST +    M +P   + +  YISRC+VC+  + ++A HSQ  D  + +CP GW  
Sbjct: 1609 YSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQ--DTSVPQCPQGWSG 1666

Query: 551  LWAGFSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTA 730
            +W G+SF M   A   G+ Q   SPGSCL+ FRA+PFIEC+ + + CN++     ++ + 
Sbjct: 1667 MWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGT-CNYYATNHGFWPSI 1725

Query: 731  VDSENQFVKAQGKILKSQTDIMNSISKCVVCQRD 832
            VD + QF K   + LK+   + + +S+C VC ++
Sbjct: 1726 VDQDKQFRKPMSQTLKA-GGLKDRVSRCQVCLKN 1758
>sp|P08122|CO4A2_MOUSE Collagen alpha 2(IV) chain precursor
          Length = 1707

 Score =  185 bits (470), Expect = 1e-46
 Identities = 102/256 (39%), Positives = 136/256 (53%), Gaps = 1/256 (0%)
 Frame = +2

Query: 71   EKGLPGDVGDRGVDGSIGFGDN-GFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDID 247
            ++G PG  G  G+ G  G   + G+L   HSQ+   P+CP G   L+SGYSLL   G   
Sbjct: 1461 QEGEPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEK 1520

Query: 248  SVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSSPQP 427
            +   DLG  GSCL  FST+PF+ C        G  C    RN +SYWLST       P  
Sbjct: 1521 AHNQDLGLAGSCLARFSTMPFLYCNP------GDVCYYASRNDKSYWLSTTAPLPMMPVA 1574

Query: 428  PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSN 607
              ++  YISRCSVC+  +  +A HSQ  D  +  CP GW+ LW G+SF M   A   G  
Sbjct: 1575 EEEIKPYISRCSVCEAPAVAIAVHSQ--DTSIPHCPAGWRSLWIGYSFLMYTAAGDEGGG 1632

Query: 608  QPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQT 787
            Q   SPGSCL+ FRA PFIECN     C+++ +  S+++T +  +N         LK+  
Sbjct: 1633 QSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKYSFWLTTIPEQNFQSTPSADTLKAGL 1692

Query: 788  DIMNSISKCVVCQRDL 835
             I   IS+C VC ++L
Sbjct: 1693 -IRTHISRCQVCMKNL 1707
>sp|Q28084|CO4A3_BOVIN Collagen alpha 3(IV) chain
          Length = 471

 Score =  185 bits (469), Expect = 2e-46
 Identities = 100/254 (39%), Positives = 145/254 (57%), Gaps = 2/254 (0%)
 Frame = +2

Query: 74  KGLPGDVGDRGVDGSIGFGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDIDSV 253
           KG PGD G       +     GF++  HSQ+   P CP+G  PLYSG+SLL + G+  + 
Sbjct: 229 KGKPGDTGPPAAGAVM----RGFVFTRHSQTTAIPSCPEGTEPLYSGFSLLFVQGNEQAH 284

Query: 254 TMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLST--LQSYMSSPQP 427
             DLGT GSCL+ F+T+PF+ C +         C    RN  SYWLST  +     +P  
Sbjct: 285 GQDLGTLGSCLQRFTTMPFLFCNI------NDVCNFASRNDYSYWLSTPAMIPMDMAPIT 338

Query: 428 PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSN 607
              ++ YISRC+VC+  +  +A HSQ +D  +  CP GW  LW GFSF M   A   G+ 
Sbjct: 339 GRALEPYISRCTVCEGPAIAIAVHSQTTD--IPPCPAGWISLWKGFSFIMFTSAGSEGAG 396

Query: 608 QPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQT 787
           Q  +SPGSCL+ FRA PFIEC+ + + CN++ +  S+++ ++D +  F K     +K+  
Sbjct: 397 QALASPGSCLEEFRASPFIECHGRGT-CNYYSNSYSFWLASLDPKRMFRKPIPSTVKA-G 454

Query: 788 DIMNSISKCVVCQR 829
           ++ N IS+C VC +
Sbjct: 455 ELENIISRCQVCMK 468
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,286,706
Number of Sequences: 369166
Number of extensions: 2547409
Number of successful extensions: 7414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7222
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)