Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_J08
(908 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29400|CO4A5_HUMAN Collagen alpha 5(IV) chain precursor 199 9e-51
sp|Q28247|CO4A5_CANFA Collagen alpha 5(IV) chain precursor 199 1e-50
sp|P02463|CO4A1_MOUSE Collagen alpha 1(IV) chain precursor 197 4e-50
sp|P17140|CO4A2_CAEEL Collagen alpha 2(IV) chain precursor ... 197 4e-50
sp|P27393|CO4A2_ASCSU Collagen alpha 2(IV) chain precursor 194 2e-49
sp|P02462|CO4A1_HUMAN Collagen alpha 1(IV) chain precursor 192 8e-49
sp|Q01955|CO4A3_HUMAN Collagen alpha 3(IV) chain precursor ... 187 5e-47
sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor 186 1e-46
sp|P08122|CO4A2_MOUSE Collagen alpha 2(IV) chain precursor 185 1e-46
sp|Q28084|CO4A3_BOVIN Collagen alpha 3(IV) chain 185 2e-46
>sp|P29400|CO4A5_HUMAN Collagen alpha 5(IV) chain precursor
Length = 1685
Score = 199 bits (506), Expect = 9e-51
Identities = 108/269 (40%), Positives = 149/269 (55%), Gaps = 16/269 (5%)
Frame = +2
Query: 71 EKGLPGDVGDRGVDGSIGFGD--------------NGFLYATHSQSKDSPICPDGGFPLY 208
+ GLPG G RG+DG G +GFL HSQ+ D+P CP G +Y
Sbjct: 1425 DPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGTLQVY 1484
Query: 209 SGYSLLAIHGDIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYW 388
G+SLL + G+ + DLGT GSCL+ FST+PF+ C + C RN SYW
Sbjct: 1485 EGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNI------NNVCNFASRNDYSYW 1538
Query: 389 LSTLQSYMSSPQP--PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAG 562
LST + S QP + +ISRC+VC+ + V+A HSQ Q+ CP GW LW G
Sbjct: 1539 LSTPEPMPMSMQPLKGQSIQPFISRCAVCEAPAVVIAVHSQTI--QIPHCPQGWDSLWIG 1596
Query: 563 FSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSE 742
+SF M A GS Q +SPGSCL+ FR+ PFIEC+ + + CN++ + S+++ VD
Sbjct: 1597 YSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT-CNYYANSYSFWLATVDVS 1655
Query: 743 NQFVKAQGKILKSQTDIMNSISKCVVCQR 829
+ F K Q + LK+ D+ IS+C VC +
Sbjct: 1656 DMFSKPQSETLKA-GDLRTRISRCQVCMK 1683
>sp|Q28247|CO4A5_CANFA Collagen alpha 5(IV) chain precursor
Length = 1691
Score = 199 bits (505), Expect = 1e-50
Identities = 107/269 (39%), Positives = 150/269 (55%), Gaps = 16/269 (5%)
Frame = +2
Query: 71 EKGLPGDVGDRGVDGSIGFGD--------------NGFLYATHSQSKDSPICPDGGFPLY 208
+ GLPG G RG+DG G +GFL HSQ+ D+P CP G +Y
Sbjct: 1431 DPGLPGQPGTRGLDGPPGPDGMQGPPGPPGTSSIAHGFLITRHSQTTDAPQCPHGTVQIY 1490
Query: 209 SGYSLLAIHGDIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYW 388
G+SLL + G+ + DLGT GSCL+ FST+PF+ C + C RN SYW
Sbjct: 1491 EGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNV------CNFASRNDYSYW 1544
Query: 389 LSTLQSYMSSPQP--PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAG 562
LST + S +P + +ISRC+VC+ + V+A HSQ Q+ CP+GW LW G
Sbjct: 1545 LSTPEPMPMSMEPLKGQSIQPFISRCAVCEAPAVVIAVHSQTI--QIPHCPHGWDSLWIG 1602
Query: 563 FSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSE 742
+SF M A GS Q +SPGSCL+ FR+ PFIEC+ + + CN++ + S+++ VD
Sbjct: 1603 YSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT-CNYYANSYSFWLATVDVS 1661
Query: 743 NQFVKAQGKILKSQTDIMNSISKCVVCQR 829
+ F K Q + LK+ D+ IS+C VC +
Sbjct: 1662 DMFSKPQSETLKA-GDLRTRISRCQVCMK 1689
>sp|P02463|CO4A1_MOUSE Collagen alpha 1(IV) chain precursor
Length = 1669
Score = 197 bits (500), Expect = 4e-50
Identities = 106/259 (40%), Positives = 147/259 (56%), Gaps = 7/259 (2%)
Frame = +2
Query: 74 KGLPGDVGDRGVDGSIG-----FGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHG 238
+G PG G G+ GS+G D+GFL HSQ+ D P+CP G LY GYSLL + G
Sbjct: 1419 RGFPGPPGPDGLPGSMGPPGTPSVDHGFLVTRHSQTTDDPLCPPGTKILYHGYSLLYVQG 1478
Query: 239 DIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSS 418
+ + DLGT GSCL+ FST+PF+ C + C RN SYWLST + S
Sbjct: 1479 NERAHGQDLGTAGSCLRKFSTMPFLFCNI------NNVCNFASRNDYSYWLSTPEPMPMS 1532
Query: 419 PQPPS--KMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQAS 592
P S + +ISRC+VC+ + VMA HSQ Q+ +CP GW LW G+SF M A
Sbjct: 1533 MAPISGDNIRPFISRCAVCEAPAMVMAVHSQTI--QIPQCPNGWSSLWIGYSFVMHTSAG 1590
Query: 593 RSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKI 772
GS Q +SPGSCL+ FR+ PFIEC+ + + CN++ + S+++ ++ F K
Sbjct: 1591 AEGSGQALASPGSCLEEFRSAPFIECHGRGT-CNYYANAYSFWLATIERSEMFKKPTPST 1649
Query: 773 LKSQTDIMNSISKCVVCQR 829
LK+ ++ +S+C VC R
Sbjct: 1650 LKA-GELRTHVSRCQVCMR 1667
>sp|P17140|CO4A2_CAEEL Collagen alpha 2(IV) chain precursor (Lethal protein 2)
Length = 1758
Score = 197 bits (500), Expect = 4e-50
Identities = 101/253 (39%), Positives = 146/253 (57%), Gaps = 4/253 (1%)
Frame = +2
Query: 77 GLPGDVGDRGVDGSIGFGD----NGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDI 244
G PG G G+ G+ G +GF+ HSQ+ + P CP+G L+ GYSLL I G+
Sbjct: 1507 GQPGGPGAPGLPGAPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNE 1566
Query: 245 DSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSSPQ 424
S DLG GSCL+ FST+PF+ C + C RN +SYWLST ++ P
Sbjct: 1567 KSHNQDLGHAGSCLQRFSTMPFLFCD------FNNVCNYASRNEKSYWLSTSEAIPMMPV 1620
Query: 425 PPSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGS 604
+++ YISRC+VC+ + +A HSQ Q+ CP GW LW G+SF M A G
Sbjct: 1621 NEREIEPYISRCAVCEAPANTIAVHSQTI--QIPNCPAGWSSLWIGYSFAMHTGAGAEGG 1678
Query: 605 NQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQ 784
Q SSPGSCL+ FRA PFIECN +C+++ + S+++T +D++++F + + LKS
Sbjct: 1679 GQSPSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKS- 1737
Query: 785 TDIMNSISKCVVC 823
++ +S+C VC
Sbjct: 1738 GNLRTRVSRCQVC 1750
Score = 57.8 bits (138), Expect = 4e-08
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = +2
Query: 485 VMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFI 664
V+ HSQ ++ + +CP G KLW G+S + ++ + NQ GSCL+ F +PF+
Sbjct: 1533 VLVKHSQTTE--VPRCPEGQTKLWDGYSL-LYIEGNEKSHNQDLGHAGSCLQRFSTMPFL 1589
Query: 665 ECNNQNSNCNHW-RDGISYYMTAVDSENQFVKAQGKILKSQTDIMNSISKCVVCQRDLNI 841
C+ N CN+ R+ SY+++ + A + ++ +I IS+C VC+ N
Sbjct: 1590 FCDFNNV-CNYASRNEKSYWLSTSE-------AIPMMPVNEREIEPYISRCAVCEAPANT 1641
Query: 842 V 844
+
Sbjct: 1642 I 1642
>sp|P27393|CO4A2_ASCSU Collagen alpha 2(IV) chain precursor
Length = 1763
Score = 194 bits (494), Expect = 2e-49
Identities = 104/255 (40%), Positives = 141/255 (55%)
Frame = +2
Query: 77 GLPGDVGDRGVDGSIGFGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDIDSVT 256
GLPG G G G + D GFL HSQ+ + P CP G L+ GYSLL I G+ S
Sbjct: 1515 GLPGPSGPPGPPGP-SYKD-GFLLVKHSQTSEVPQCPPGMVKLWDGYSLLYIEGNEKSHN 1572
Query: 257 MDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSSPQPPSK 436
DLG GSCL FST+PF+ C + C RN +SYWLST P
Sbjct: 1573 QDLGHAGSCLSRFSTMPFLFCDVNNV------CNYASRNDKSYWLSTTAPIPMMPVSEGG 1626
Query: 437 MDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSNQPF 616
++ YISRC+VC+ + V+A HSQ Q+ CP GW LW G+SF M A G Q
Sbjct: 1627 IEPYISRCAVCEAPANVIAVHSQTI--QIPNCPNGWNSLWIGYSFAMHTGAGAEGGGQSL 1684
Query: 617 SSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQTDIM 796
SSPGSCL+ FRA PFIECN C+++ + S+++T ++ + QF + + LK+ + +
Sbjct: 1685 SSPGSCLEDFRATPFIECNGARGTCHYFANKFSFWLTTIEDDQQFRIPESETLKAGS-LR 1743
Query: 797 NSISKCVVCQRDLNI 841
+S+C VC R ++
Sbjct: 1744 TRVSRCQVCIRSPDV 1758
Score = 58.2 bits (139), Expect = 3e-08
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +2
Query: 497 HSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFIECNN 676
HSQ S+ + +CP G KLW G+S + ++ + NQ GSCL F +PF+ C+
Sbjct: 1539 HSQTSE--VPQCPPGMVKLWDGYSL-LYIEGNEKSHNQDLGHAGSCLSRFSTMPFLFCD- 1594
Query: 677 QNSNCNHW-RDGISYYMTAVDSENQFVKAQGKILKSQTDIMNSISKCVVCQRDLNIV 844
N+ CN+ R+ SY+++ ++G I IS+C VC+ N++
Sbjct: 1595 VNNVCNYASRNDKSYWLSTTAPIPMMPVSEG-------GIEPYISRCAVCEAPANVI 1644
>sp|P02462|CO4A1_HUMAN Collagen alpha 1(IV) chain precursor
Length = 1669
Score = 192 bits (489), Expect = 8e-49
Identities = 105/259 (40%), Positives = 144/259 (55%), Gaps = 7/259 (2%)
Frame = +2
Query: 74 KGLPGDVGDRGVDGSIG-----FGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHG 238
+G PG G G+ GS+G D+GFL HSQ+ D P CP G LY GYSLL + G
Sbjct: 1419 RGFPGPPGPDGLPGSMGPPGTPSVDHGFLVTRHSQTIDDPQCPSGTKILYHGYSLLYVQG 1478
Query: 239 DIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSS 418
+ + DLGT GSCL+ FST+PF+ C + C RN SYWLST + S
Sbjct: 1479 NERAHGQDLGTAGSCLRKFSTMPFLFCNI------NNVCNFASRNDYSYWLSTPEPMPMS 1532
Query: 419 PQP--PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQAS 592
P + +ISRC+VC+ + VMA HSQ Q+ CP GW LW G+SF M A
Sbjct: 1533 MAPITGENIRPFISRCAVCEAPAMVMAVHSQTI--QIPPCPSGWSSLWIGYSFVMHTSAG 1590
Query: 593 RSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKI 772
GS Q +SPGSCL+ FR+ PFIEC+ + + CN++ + S+++ ++ F K
Sbjct: 1591 AEGSGQALASPGSCLEEFRSAPFIECHGRGT-CNYYANAYSFWLATIERSEMFKKPTPST 1649
Query: 773 LKSQTDIMNSISKCVVCQR 829
LK+ ++ +S+C VC R
Sbjct: 1650 LKA-GELRTHVSRCQVCMR 1667
>sp|Q01955|CO4A3_HUMAN Collagen alpha 3(IV) chain precursor (Goodpasture antigen)
Length = 1670
Score = 187 bits (474), Expect = 5e-47
Identities = 101/254 (39%), Positives = 147/254 (57%), Gaps = 3/254 (1%)
Frame = +2
Query: 77 GLPGDVGDRGVDGSIG-FGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDIDSV 253
GLPG G RG GS + GF++ HSQ+ P CP+G PLYSG+S L + G+ +
Sbjct: 1424 GLPGLKGKRGDSGSPATWTTRGFVFTRHSQTTAIPSCPEGTVPLYSGFSFLFVQGNQRAH 1483
Query: 254 TMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLST--LQSYMSSPQP 427
DLGT GSCL+ F+T+PF+ C + C RN SYWLST L +P
Sbjct: 1484 GQDLGTLGSCLQRFTTMPFLFCNV------NDVCNFASRNDYSYWLSTPALMPMNMAPIT 1537
Query: 428 PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSN 607
++ YISRC+VC+ + +A HSQ +D + CP+GW LW GFSF M A G+
Sbjct: 1538 GRALEPYISRCTVCEGPAIAIAVHSQTTD--IPPCPHGWISLWKGFSFIMFTSAGSEGTG 1595
Query: 608 QPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQT 787
Q +SPGSCL+ FRA PF+EC+ + + CN++ + S+++ +++ E F K +K+
Sbjct: 1596 QALASPGSCLEEFRASPFLECHGRGT-CNYYSNSYSFWLASLNPERMFRKPIPSTVKA-G 1653
Query: 788 DIMNSISKCVVCQR 829
++ IS+C VC +
Sbjct: 1654 ELEKIISRCQVCMK 1667
Score = 62.0 bits (149), Expect = 2e-09
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Frame = +2
Query: 149 ATHSQSKDSPICPDGGFPLYSGYSLLAI-HGDIDSVTMDLGTPGSCLKNFSTIPFVNCFL 325
A HSQ+ D P CP G L+ G+S + + L +PGSCL+ F PF+ C
Sbjct: 1559 AVHSQTTDIPPCPHGWISLWKGFSFIMFTSAGSEGTGQALASPGSCLEEFRASPFLECH- 1617
Query: 326 ERNTFYGGRCQINM-RNSRSYWLSTLQSYMSSPQP-PS-----KMDDYISRCSVCQTK 478
GR N NS S+WL++L +P PS +++ ISRC VC K
Sbjct: 1618 -------GRGTCNYYSNSYSFWLASLNPERMFRKPIPSTVKAGELEKIISRCQVCMKK 1668
>sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor
Length = 1759
Score = 186 bits (471), Expect = 1e-46
Identities = 100/274 (36%), Positives = 149/274 (54%), Gaps = 22/274 (8%)
Frame = +2
Query: 77 GLPGDVGDRGVDGSIGFGDN--------------------GFLYATHSQSKDSPICPDGG 196
G+PG GD+G G+ G N GF +A HSQ+ P CP G
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPGGWAPSRGFTFAKHSQTTAVPQCPPGA 1554
Query: 197 FPLYSGYSLLAIHGDIDSVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNS 376
L+ GYSLL + G+ + DLG PGSCL F+T+PF+ C + C ++ RN
Sbjct: 1555 SQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMN------SVCHVSSRND 1608
Query: 377 RSYWLSTLQSY--MSSPQPPSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQK 550
S+WLST + M +P + + YISRC+VC+ + ++A HSQ D + +CP GW
Sbjct: 1609 YSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQ--DTSVPQCPQGWSG 1666
Query: 551 LWAGFSFPMAVQASRSGSNQPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTA 730
+W G+SF M A G+ Q SPGSCL+ FRA+PFIEC+ + + CN++ ++ +
Sbjct: 1667 MWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGT-CNYYATNHGFWPSI 1725
Query: 731 VDSENQFVKAQGKILKSQTDIMNSISKCVVCQRD 832
VD + QF K + LK+ + + +S+C VC ++
Sbjct: 1726 VDQDKQFRKPMSQTLKA-GGLKDRVSRCQVCLKN 1758
>sp|P08122|CO4A2_MOUSE Collagen alpha 2(IV) chain precursor
Length = 1707
Score = 185 bits (470), Expect = 1e-46
Identities = 102/256 (39%), Positives = 136/256 (53%), Gaps = 1/256 (0%)
Frame = +2
Query: 71 EKGLPGDVGDRGVDGSIGFGDN-GFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDID 247
++G PG G G+ G G + G+L HSQ+ P+CP G L+SGYSLL G
Sbjct: 1461 QEGEPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEK 1520
Query: 248 SVTMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLSTLQSYMSSPQP 427
+ DLG GSCL FST+PF+ C G C RN +SYWLST P
Sbjct: 1521 AHNQDLGLAGSCLARFSTMPFLYCNP------GDVCYYASRNDKSYWLSTTAPLPMMPVA 1574
Query: 428 PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSN 607
++ YISRCSVC+ + +A HSQ D + CP GW+ LW G+SF M A G
Sbjct: 1575 EEEIKPYISRCSVCEAPAVAIAVHSQ--DTSIPHCPAGWRSLWIGYSFLMYTAAGDEGGG 1632
Query: 608 QPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQT 787
Q SPGSCL+ FRA PFIECN C+++ + S+++T + +N LK+
Sbjct: 1633 QSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKYSFWLTTIPEQNFQSTPSADTLKAGL 1692
Query: 788 DIMNSISKCVVCQRDL 835
I IS+C VC ++L
Sbjct: 1693 -IRTHISRCQVCMKNL 1707
>sp|Q28084|CO4A3_BOVIN Collagen alpha 3(IV) chain
Length = 471
Score = 185 bits (469), Expect = 2e-46
Identities = 100/254 (39%), Positives = 145/254 (57%), Gaps = 2/254 (0%)
Frame = +2
Query: 74 KGLPGDVGDRGVDGSIGFGDNGFLYATHSQSKDSPICPDGGFPLYSGYSLLAIHGDIDSV 253
KG PGD G + GF++ HSQ+ P CP+G PLYSG+SLL + G+ +
Sbjct: 229 KGKPGDTGPPAAGAVM----RGFVFTRHSQTTAIPSCPEGTEPLYSGFSLLFVQGNEQAH 284
Query: 254 TMDLGTPGSCLKNFSTIPFVNCFLERNTFYGGRCQINMRNSRSYWLST--LQSYMSSPQP 427
DLGT GSCL+ F+T+PF+ C + C RN SYWLST + +P
Sbjct: 285 GQDLGTLGSCLQRFTTMPFLFCNI------NDVCNFASRNDYSYWLSTPAMIPMDMAPIT 338
Query: 428 PSKMDDYISRCSVCQTKSTVMAFHSQRSDWQMTKCPYGWQKLWAGFSFPMAVQASRSGSN 607
++ YISRC+VC+ + +A HSQ +D + CP GW LW GFSF M A G+
Sbjct: 339 GRALEPYISRCTVCEGPAIAIAVHSQTTD--IPPCPAGWISLWKGFSFIMFTSAGSEGAG 396
Query: 608 QPFSSPGSCLKHFRALPFIECNNQNSNCNHWRDGISYYMTAVDSENQFVKAQGKILKSQT 787
Q +SPGSCL+ FRA PFIEC+ + + CN++ + S+++ ++D + F K +K+
Sbjct: 397 QALASPGSCLEEFRASPFIECHGRGT-CNYYSNSYSFWLASLDPKRMFRKPIPSTVKA-G 454
Query: 788 DIMNSISKCVVCQR 829
++ N IS+C VC +
Sbjct: 455 ELENIISRCQVCMK 468
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,286,706
Number of Sequences: 369166
Number of extensions: 2547409
Number of successful extensions: 7414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7222
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)