Planaria EST Database


DrC_02329

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02329
         (926 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H8V3|ECT2_HUMAN  ECT2 protein (Epithelial cell transfor...    36   0.13 
sp|Q9H329|E41LB_HUMAN  Band 4.1-like protein 4B (EHM2 protei...    33   1.1  
sp|Q07139|ECT2_MOUSE  ECT2 protein (Epithelial cell transfor...    32   1.9  
sp|Q9JMC8|E41LB_MOUSE  Band 4.1-like protein 4B (EHM2 protein)     32   2.5  
sp|Q8BRH4|MLL3_MOUSE  Myeloid/lymphoid or mixed-lineage leuk...    32   2.5  
sp|Q03213|YM41_YEAST  Hypothetical 79.4 kDa protein in ALD2-...    32   3.3  
sp|Q9UUI4|YIY9_SCHPO  Hypothetical protein C22F8.09 in chrom...    31   5.6  
sp|Q9YID8|POLG_EC23C  Genome polyprotein [Contains: Coat pro...    31   5.6  
sp|P48193|41_MOUSE  Protein 4.1 (Band 4.1) (P4.1) (4.1R)           30   7.4  
sp|P20929|NEBU_HUMAN  Nebulin                                      30   7.4  
>sp|Q9H8V3|ECT2_HUMAN ECT2 protein (Epithelial cell transforming sequence 2 oncogene)
          Length = 883

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 14/180 (7%)
 Frame = +2

Query: 269 EIQQSVSMLYLNNPNINELSRR-NTILRDVVQEKDLEEANKAKYNTMPSRER----GTML 433
           E+++SVSML LN PN N   RR    L  + ++ D+      K    PS E     G++L
Sbjct: 330 ELKKSVSMLSLNTPNSNRKRRRLKETLAQLSRDTDVSPFPPRK---RPSAEHSLSIGSLL 386

Query: 434 GTQDTLDSLFIPNHHGSVDNAASHSPINTPVDSPK------LLERKHTESQRTQSLDHIL 595
              +T +S    N+  +  +    S  +TPV S +        E   TES     L  I+
Sbjct: 387 DISNTPESSI--NYGDTPKSCTKSSKSSTPVPSKQSARWQVAKELYQTESNYVNILATII 444

Query: 596 EEPCIPEQREYTK---YLMTEDRKXXXXXXXXXXXXXXXLNDTIDSGSINTKLSSSHGDI 766
           +   +P + E  +    L  E+ K               + D ++   +N   S S GDI
Sbjct: 445 QLFQVPLEEEGQRGGPILAPEEIKTIFGSIPDIFDVHTKIKDDLEDLIVNWDESKSIGDI 504
>sp|Q9H329|E41LB_HUMAN Band 4.1-like protein 4B (EHM2 protein) (FERM-containing protein
           CG1)
          Length = 913

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 8/161 (4%)
 Frame = +2

Query: 83  KKKHVLGFKCETSVAACALWKWANDRMCFFSLNRSSEAKRVKSGGGIFKKRKTFKFAGRC 262
           +++H   F+ +++     LWK A +   FF L     +K  +S     +    F+F+GR 
Sbjct: 322 EQEHTFVFRLDSARTCKHLWKCAVEHHAFFRLRTPGNSKSNRS--DFIRLGSRFRFSGRT 379

Query: 263 QKEIQQSVSM----LYLNNPNINELSRRNTILR---DVVQEKDLEEANKAKYNTMPSRER 421
           + +      +     +   P+    SRR++  +    V+  +   + N   +N  P    
Sbjct: 380 EYQATHGSRLRRTSTFERKPSKRYPSRRHSTFKASNPVIAAQLCSKTNPEVHNYQPQ--- 436

Query: 422 GTMLGTQDTLDSLFIPNHHGSVDNAASHSP-INTPVDSPKL 541
                        + PN H S      HSP ++ P+ SP L
Sbjct: 437 -------------YHPNIHPSQPRWHPHSPNVSYPLPSPVL 464
>sp|Q07139|ECT2_MOUSE ECT2 protein (Epithelial cell transforming sequence 2 oncogene)
          Length = 738

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 46/181 (25%), Positives = 71/181 (39%), Gaps = 15/181 (8%)
 Frame = +2

Query: 269 EIQQSVSMLYLNNPNINELSRR-NTILRDVVQEKDLEEANKAKYNTMPSRER----GTML 433
           E+++SVS+L L+ PN N   RR    L  + +E DL      K    PS E     G++L
Sbjct: 186 ELKKSVSLLSLSTPNSNRKRRRLKETLAQLSRETDLSPFPPRK---RPSAEHSLSIGSLL 242

Query: 434 GTQDTLDSLFIPNHHGSVDNAASHSPINTPVDSPK-------LLERKHTESQRTQSLDHI 592
              +T +S     H+G    + + S  ++    PK         E   TES     L  I
Sbjct: 243 DISNTPESSI---HYGETPKSCAKSSRSSTPVPPKQSARWQVAKELYQTESNYVNILATI 299

Query: 593 LEEPCIPEQREYTK---YLMTEDRKXXXXXXXXXXXXXXXLNDTIDSGSINTKLSSSHGD 763
           ++   +P + E  +    L  E+ K               + D ++    N   S S GD
Sbjct: 300 IQLFQVPLEEEGQRGGPILAPEEIKTIFGSIPDIFDVHMKIKDDLEDLIANWDESRSIGD 359

Query: 764 I 766
           I
Sbjct: 360 I 360
>sp|Q9JMC8|E41LB_MOUSE Band 4.1-like protein 4B (EHM2 protein)
          Length = 527

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
 Frame = +2

Query: 83  KKKHVLGFKCETSVAACALWKWANDRMCFFSLNRSSEAKRVKSGGGIFKKRKTFKFAGRC 262
           +++H   F+ +++     LWK A +   FF L   S +K  +S     +    F+F+GR 
Sbjct: 336 EQEHTFVFRLDSARTCKHLWKCAVEHHAFFRLRTPSNSKSARS--DFIRLGSRFRFSGRT 393

Query: 263 QKEIQQSVSM----LYLNNPNINELSRRNTILR---DVVQEKDLEEANKAKYNTMP 409
           + +      +     +   P+    SRR++  +    ++  +   +AN   +N  P
Sbjct: 394 EYQATHGSRLRRTSTFERKPSKRYPSRRHSTFKASNPIIAAQLCSKANPEVHNYQP 449
>sp|Q8BRH4|MLL3_MOUSE Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3)
          Length = 4903

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +2

Query: 386  KAKYNTMPSRERGTMLGTQDTLDSLFIPNHHGSVDNA--ASHSPINTPVDSPKLLERKHT 559
            +A  N +P    G ++   DT      P   G +D    AS S +  P D P +  R H+
Sbjct: 2245 QAAQNRVPGLP-GPLIRPPDTCSQTPRPPGPGRIDTFTHASSSAVRDPYDQPPVTPRPHS 2303

Query: 560  ESQRTQSLDHILEEPCIP 613
            ES  T  + H L +  +P
Sbjct: 2304 ESFGTSQVVHDLVDRPVP 2321
>sp|Q03213|YM41_YEAST Hypothetical 79.4 kDa protein in ALD2-DDR48 intergenic region
          Length = 719

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
 Frame = +2

Query: 272 IQQSVSMLYLNNPNINELSRRNTILRDVVQEKDLEEANKAKYNTMPSRERGTMLGTQDTL 451
           I  + +   LNN   N L   NTIL D  Q+ +    ++    ++P+R+ G ++ TQ   
Sbjct: 287 IDVNTNTAQLNNQFSNAL---NTILPD--QQHNRNNVSQNINQSLPNRQLGPVINTQANQ 341

Query: 452 DSLFIPNHHGSVDNAASHSPINTP---VDSPKLL-------ERKHTESQRTQSL-DH 589
           +   +  H+ +     + SPI+ P    D P  L        R++T+S    S  DH
Sbjct: 342 NQSQVLIHNTNTHQQVNRSPISFPNASTDKPFKLNPNGIKRRRRNTQSNNNASTNDH 398
>sp|Q9UUI4|YIY9_SCHPO Hypothetical protein C22F8.09 in chromosome I
          Length = 419

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 470 NHHGSVDNAASHSPINTPVDSPKLLERKHTESQRTQSLDHILEEPCIPEQREYTKYLMTE 649
           NH    D+ + H    TP+ S K   ++ T SQR +      EE  + EQ++  + L T 
Sbjct: 247 NHSIDSDDQSEHEQAETPIPSSK--NKRKTRSQRNKIRQRREEELRLLEQKKNEELLRTI 304

Query: 650 DR 655
           D+
Sbjct: 305 DK 306
>sp|Q9YID8|POLG_EC23C Genome polyprotein [Contains: Coat protein VP0 (P1AB); Coat protein
            VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (Core
            protein P2A); Core protein P2B; Core protein P2C; Core
            protein P3A; Genome-linked protein VPg (P3B); Picornain
            3C (Protease 3C) (P3C); RNA-directed RNA polymerase
            (P3D)]
          Length = 2188

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 668  CEYSSDPLSLGI*CIPFVLEYMVLLRYDREIEYVGIQYAFA 546
            C Y+++ +S G+ C+P V    V+L  DREIE   +Q   A
Sbjct: 2033 CIYTTNLISPGVDCLPIVYGDDVILSLDREIEPERLQSIMA 2073
>sp|P48193|41_MOUSE Protein 4.1 (Band 4.1) (P4.1) (4.1R)
          Length = 858

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +2

Query: 77  PSKKKH---VLGFKCETSVAACALWKWANDRMCFFSLNRSSEAKRVKSGGGIFKKRKTFK 247
           P +++H    +GFK  +  AA  LWK   +   FF L  +    + K           F+
Sbjct: 454 PGEQEHYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSK----FLALGSKFR 509

Query: 248 FAGRCQKEIQQSVSML 295
           ++GR Q + +Q+ +++
Sbjct: 510 YSGRTQAQTRQASALI 525
>sp|P20929|NEBU_HUMAN Nebulin
          Length = 6669

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 40/177 (22%), Positives = 59/177 (33%), Gaps = 2/177 (1%)
 Frame = +2

Query: 134  ALWKWANDRMCFFSLNRSSEAKRVKSGGGIFKKRKTFKFAGRCQKEIQQSVSMLYLNNPN 313
            A WKW  DR  F    +SS                        Q + +  +   +L    
Sbjct: 5556 AHWKWTPDRPDFLQAAKSSLQ----------------------QSDFEYKLDREFLKGCK 5593

Query: 314  INELSRRNTI--LRDVVQEKDLEEANKAKYNTMPSRERGTMLGTQDTLDSLFIPNHHGSV 487
            ++    +NT+  LR+ + E DL      KY     +ERGT     DT   L       +V
Sbjct: 5594 LSVTDDKNTVLALRNTLIESDL------KYKEKHVKERGTCHAVPDTPQILLAK----TV 5643

Query: 488  DNAASHSPINTPVDSPKLLERKHTESQRTQSLDHILEEPCIPEQREYTKYLMTEDRK 658
             N  S +     V    L +  +T    T+   H+ E         Y K  + E  K
Sbjct: 5644 SNLVSENKYKDHV-KKHLAQGSYTTLPETRDTVHVKEVTKHVSDTNYKKKFVKEKGK 5699
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,639,409
Number of Sequences: 369166
Number of extensions: 2028726
Number of successful extensions: 6007
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6003
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)