Planaria EST Database


DrC_02298

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02298
         (816 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RBI3|PSD12_PONPY  26S proteasome non-ATPase regulatory ...   249   8e-66
sp|O00232|PSD12_HUMAN  26S proteasome non-ATPase regulatory ...   249   8e-66
sp|Q9D8W5|PSD12_MOUSE  26S proteasome non-ATPase regulatory ...   242   1e-63
sp|Q12250|RPN5_YEAST  26S proteasome regulatory subunit RPN5...   174   3e-43
sp|Q9UTM3|RPN5_SCHPO  26S proteasome regulatory subunit rpn5      169   1e-41
sp|Q8L5U0|CSN4_ARATH  COP9 signalosome complex subunit 4 (Si...    44   4e-04
sp|Q9V345|CSN4_DROME  COP9 signalosome complex subunit 4 (Si...    43   0.001
sp|Q97FK1|SBCC_CLOAB  Nuclease sbcCD subunit C                     37   0.065
sp|O01422|CSN2_CAEEL  COP9 signalosome complex subunit 2 (Si...    37   0.065
sp|Q9HFR0|CSN2_SCHPO  COP9 signalosome complex subunit 2 (CS...    35   0.32 
>sp|Q5RBI3|PSD12_PONPY 26S proteasome non-ATPase regulatory subunit 12 (26S proteasome
           regulatory subunit p55)
          Length = 456

 Score =  249 bits (635), Expect = 8e-66
 Identities = 129/268 (48%), Positives = 179/268 (66%), Gaps = 8/268 (2%)
 Frame = +1

Query: 1   MRLCLAKKDAIRTQXXXXXXXXXXFVDESFEPLKLKFYKLMIDLDLSENNYLNISKHYFE 180
           MRLCLA KD IRTQ          F +E+ E LKLK+Y LMI LD  E +YL+I KHY  
Sbjct: 190 MRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICKHYRA 249

Query: 181 IYQSKSIHAVEENRLLNLKNVMVFLLLARFDHEQNDLLYRHKSACEKDIEKLPMIKEIIT 360
           IY +  I A  E     LK+V+++++LA FD+EQ+DL+  H+ + +K +E++P  K+++ 
Sbjct: 250 IYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLV--HRISGDKKLEEIPKYKDLLK 307

Query: 361 LFCTKEVMLWRVFCEKYESELKK--------DLIFNGEQGDKRWEQLHNRIVEHNIRIMA 516
           LF T E+M W    E Y  EL+K        D+  + E+G+KRW+ L NR+VEHNIRIMA
Sbjct: 308 LFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMA 367

Query: 517 EYYTQIRVSKMANMLDIDEKTLEKFLSDLVVNKTIEAKIDRLLGITHFTKTKDATEIVND 696
           +YYT+I + +MA +LD+     E FLS+LVVNKTI AK+DRL GI +F + KD   ++ND
Sbjct: 368 KYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLND 427

Query: 697 WSYNINQLLSLIKKTNHLINKEKMIHHV 780
           WS  +N L+SL+ KT HLI KE+MIH++
Sbjct: 428 WSQKLNSLMSLVNKTTHLIAKEEMIHNL 455
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 (26S proteasome
           regulatory subunit p55)
          Length = 456

 Score =  249 bits (635), Expect = 8e-66
 Identities = 129/268 (48%), Positives = 179/268 (66%), Gaps = 8/268 (2%)
 Frame = +1

Query: 1   MRLCLAKKDAIRTQXXXXXXXXXXFVDESFEPLKLKFYKLMIDLDLSENNYLNISKHYFE 180
           MRLCLA KD IRTQ          F +E+ E LKLK+Y LMI LD  E +YL+I KHY  
Sbjct: 190 MRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICKHYRA 249

Query: 181 IYQSKSIHAVEENRLLNLKNVMVFLLLARFDHEQNDLLYRHKSACEKDIEKLPMIKEIIT 360
           IY +  I A  E     LK+V+++++LA FD+EQ+DL+  H+ + +K +E++P  K+++ 
Sbjct: 250 IYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLV--HRISGDKKLEEIPKYKDLLK 307

Query: 361 LFCTKEVMLWRVFCEKYESELKK--------DLIFNGEQGDKRWEQLHNRIVEHNIRIMA 516
           LF T E+M W    E Y  EL+K        D+  + E+G+KRW+ L NR+VEHNIRIMA
Sbjct: 308 LFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMA 367

Query: 517 EYYTQIRVSKMANMLDIDEKTLEKFLSDLVVNKTIEAKIDRLLGITHFTKTKDATEIVND 696
           +YYT+I + +MA +LD+     E FLS+LVVNKTI AK+DRL GI +F + KD   ++ND
Sbjct: 368 KYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLND 427

Query: 697 WSYNINQLLSLIKKTNHLINKEKMIHHV 780
           WS  +N L+SL+ KT HLI KE+MIH++
Sbjct: 428 WSQKLNSLMSLVNKTTHLIAKEEMIHNL 455
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 (26S proteasome
           regulatory subunit p55)
          Length = 456

 Score =  242 bits (617), Expect = 1e-63
 Identities = 125/268 (46%), Positives = 178/268 (66%), Gaps = 8/268 (2%)
 Frame = +1

Query: 1   MRLCLAKKDAIRTQXXXXXXXXXXFVDESFEPLKLKFYKLMIDLDLSENNYLNISKHYFE 180
           MRLCLA KD IRTQ            +E+ E +KLK+Y LMI LD  E +YL+I KHY  
Sbjct: 190 MRLCLAVKDYIRTQIISKKINTKFSQEENTENMKLKYYNLMIQLDQHEGSYLSICKHYRA 249

Query: 181 IYQSKSIHAVEENRLLNLKNVMVFLLLARFDHEQNDLLYRHKSACEKDIEKLPMIKEIIT 360
           IY +  I A  +     LK+V+++++LA FD+EQ+DL++R  S  +K +E++P  K+++ 
Sbjct: 250 IYDTPCIQAESDKWQQALKSVVLYVILAPFDNEQSDLVHRISS--DKKLEEIPKYKDLLK 307

Query: 361 LFCTKEVMLWRVFCEKYESELKK--------DLIFNGEQGDKRWEQLHNRIVEHNIRIMA 516
           LF T E+M W    E Y  EL+K        D+  + E+G+KRW+ L +R+VEHNIRIMA
Sbjct: 308 LFTTMELMRWSTLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMA 367

Query: 517 EYYTQIRVSKMANMLDIDEKTLEKFLSDLVVNKTIEAKIDRLLGITHFTKTKDATEIVND 696
           +YYT+I + +MA +LD+     E FLS+LVVNKTI AK+DRL G+ +F + KD   ++ND
Sbjct: 368 KYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLND 427

Query: 697 WSYNINQLLSLIKKTNHLINKEKMIHHV 780
           WS  +N L+SL+ KT HLI KE+MIH++
Sbjct: 428 WSQKLNSLMSLVNKTTHLIAKEEMIHNL 455
>sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5 (Proteasome non-ATPase
           subunit 5)
          Length = 445

 Score =  174 bits (440), Expect = 3e-43
 Identities = 87/259 (33%), Positives = 156/259 (60%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1   MRLCLAKKDAIRTQXXXXXXXXXXFVDESFEPLKLKFYKLMIDLDLSENNYLNISKHYFE 180
           M L + K D  +            F +  +E LKL++Y L++ + L +  YL ++++  E
Sbjct: 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE 243

Query: 181 IYQSKSIHAVEENRLLNLKNVMVFLLLARFDHEQNDLLYRHKSACEKDIEKLPMIKEIIT 360
           IYQ+ +I + E      L +++ FL+L+ + + QNDL+  HK   + +++KL   + ++ 
Sbjct: 244 IYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLI--HKIQNDNNLKKLESQESLVK 301

Query: 361 LFCTKEVMLWRVFCEKYESELKKD-LIFNGEQGDKRWEQLHNRIVEHNIRIMAEYYTQIR 537
           LF T E+M W +  + YE  L +D L F GE     WE L  R++EHN+R+++EYY++I 
Sbjct: 302 LFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRIT 361

Query: 538 VSKMANMLDIDEKTLEKFLSDLVVNKTIEAKIDRLLGITHFTKTKDATEIVNDWSYNINQ 717
           + ++  +LD+ E   E ++SDLV    I AK++R   I +F K K++++++N+WS+N+++
Sbjct: 362 LLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDE 421

Query: 718 LLSLIKKTNHLINKEKMIH 774
           LL  I+   HLI KE+++H
Sbjct: 422 LLEHIETIGHLITKEEIMH 440
>sp|Q9UTM3|RPN5_SCHPO 26S proteasome regulatory subunit rpn5
          Length = 443

 Score =  169 bits (427), Expect = 1e-41
 Identities = 88/262 (33%), Positives = 147/262 (56%), Gaps = 2/262 (0%)
 Frame = +1

Query: 1   MRLCLAKKDAIRTQXXXXXXXXXXFVDESFEPLKLKFYKLMIDLDLSENNYLNISKHYFE 180
           +RL L + D               F  E  + LKLK+Y+  I + L ++ YL++ K+Y  
Sbjct: 178 VRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYYRA 237

Query: 181 IYQSKSIHAVEENRLLNLKNVMVFLLLARFDHEQNDLLYRHKSACEKDIEKLPMIKEIIT 360
           +Y +  +    E     L+NV+ F LL  +D+EQ DLL  H+   +  +  LP++++++ 
Sbjct: 238 VYDTAVVQEDPEKWKEILENVVCFALLTPYDNEQADLL--HRINADHKLNSLPLLQQLVK 295

Query: 361 LFCTKEVMLWRVFCEKYESELKKDLIF--NGEQGDKRWEQLHNRIVEHNIRIMAEYYTQI 534
            F   E+M W    E Y S L+ + +F  N E+G+KRW +L  R++EHNIR++A YY++I
Sbjct: 296 CFIVNELMRWPKIAEIYGSALRSNPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRI 355

Query: 535 RVSKMANMLDIDEKTLEKFLSDLVVNKTIEAKIDRLLGITHFTKTKDATEIVNDWSYNIN 714
             S++  +LD+     E+FL DL+      AKIDR   +  F K+++  E +N+W  NI 
Sbjct: 356 HCSRLGVLLDMSPSETEQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNIT 415

Query: 715 QLLSLIKKTNHLINKEKMIHHV 780
           +LL  ++K   LI KE+M++ +
Sbjct: 416 ELLGKLEKVRQLIIKEEMMNSI 437
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 (Signalosome subunit 4)
           (Constitutive photomorphogenesis protein 8) (FUSCA
           protein 4) (FUSCA4) (AtS4)
          Length = 397

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 22/82 (26%), Positives = 41/82 (50%)
 Frame = +1

Query: 475 LHNRIVEHNIRIMAEYYTQIRVSKMANMLDIDEKTLEKFLSDLVVNKTIEAKIDRLLGIT 654
           L   ++EHN+   ++ YT IR  ++  +L ID +  EK  ++++    +   ID+   + 
Sbjct: 299 LDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAVI 358

Query: 655 HFTKTKDATEIVNDWSYNINQL 720
           HF   +D  E +  W   I+ L
Sbjct: 359 HF---EDDVEELQQWDQQISGL 377
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 (Signalosome subunit 4) (Dch4)
          Length = 407

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/95 (26%), Positives = 43/95 (45%)
 Frame = +1

Query: 475 LHNRIVEHNIRIMAEYYTQIRVSKMANMLDIDEKTLEKFLSDLVVNKTIEAKIDRLLGIT 654
           L   + EHN+   ++ Y  I   ++  +LDI     EK  S ++    +   ID++  I 
Sbjct: 307 LDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQISAIV 366

Query: 655 HFTKTKDATEIVNDWSYNINQLLSLIKKTNHLINK 759
           HF    +  E++  W     Q+ SL  + N +I K
Sbjct: 367 HF----ENRELLPQWD---RQIQSLCYQVNSIIEK 394
>sp|Q97FK1|SBCC_CLOAB Nuclease sbcCD subunit C
          Length = 1163

 Score = 37.0 bits (84), Expect = 0.065
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
 Frame = +1

Query: 271  DHEQNDLLYRHKSACEKDIEKLPMIKEIITLFCTKEVMLWRVFCEKYESELKK------- 429
            D + ND+   +K   E+  E +   KE       KE+ L +   EKY++EL K       
Sbjct: 871  DRKVNDIDKLNKILMEEKFENIEKAKE--NYLNDKEINLLKSDVEKYKNELSKVNGAVEV 928

Query: 430  --DLIFNGEQGDKRWEQLHNRIVEHNIRIMAEYYTQIRVSKMANMLDIDEKTLEKFLSDL 603
                + N +  +++W ++ N  VE   +  A     I++ +    ++I  K L K L   
Sbjct: 929  LSKKLKNRKLTEEKWIEIQNNRVEKASKAKALQERSIKLEEEVKNIEIKLKELGKLLK-- 986

Query: 604  VVNKTIEAKIDRLLGITHFTKTKDATEIV 690
               + +E K+  L  +    K K   E V
Sbjct: 987  -TKQELEHKLSLLDDLEKLFKGKKFVEFV 1014
>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 (Signalosome subunit 2)
          Length = 495

 Score = 37.0 bits (84), Expect = 0.065
 Identities = 31/181 (17%), Positives = 78/181 (43%)
 Frame = +1

Query: 130 LDLSENNYLNISKHYFEIYQSKSIHAVEENRLLNLKNVMVFLLLARFDHEQNDLLYRHKS 309
           + L +  +L+    +FE +++    +    R   LK +++  +L + D    D     ++
Sbjct: 244 MHLRDGRFLDAHTDFFEAFKNYD-ESGSPRRTTCLKYLVLANMLIKSDINPFD---SQEA 299

Query: 310 ACEKDIEKLPMIKEIITLFCTKEVMLWRVFCEKYESELKKDLIFNGEQGDKRWEQLHNRI 489
              K+  ++  + +++  +   ++  +      ++  +  D         +  E+L N I
Sbjct: 300 KPFKNEPEIVAMTQMVQAYQDNDIQAFEQIMAAHQDSIMADPFIR-----EHTEELMNNI 354

Query: 490 VEHNIRIMAEYYTQIRVSKMANMLDIDEKTLEKFLSDLVVNKTIEAKIDRLLGITHFTKT 669
               +  +   YT +R+S ++  L + +K +   L D +++  +EAKI+   G+    K 
Sbjct: 355 RTQVLLRLIRPYTNVRISYLSQKLKVSQKEVIHLLVDAILDDGLEAKINEESGMIEMPKN 414

Query: 670 K 672
           K
Sbjct: 415 K 415
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 (CSN complex subunit 2) (SGN2)
          Length = 437

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 35/203 (17%), Positives = 93/203 (45%)
 Frame = +1

Query: 130 LDLSENNYLNISKHYFEIYQSKSIHAVEENRLLNLKNVMVFLLLARFDHEQNDLLYRHKS 309
           + + EN +     ++FE ++S    A   +R+  LK +++  +L+  +    D     ++
Sbjct: 246 MHMQENQWSEAQTNFFESFKSYD-EAGSSDRIRVLKYLVLANMLSESEINPFD---SPET 301

Query: 310 ACEKDIEKLPMIKEIITLFCTKEVMLWRVFCEKYESELKKDLIFNGEQGDKRWEQLHNRI 489
              KD   +  + +++  +  +++       + Y+ ++  D  F  +  DK    + +++
Sbjct: 302 QPYKDNPHIIAMTKLVEAYQIRDITAVERILQTYQHDILDD-DFIRQYVDKILYSIRSQV 360

Query: 490 VEHNIRIMAEYYTQIRVSKMANMLDIDEKTLEKFLSDLVVNKTIEAKIDRLLGITHFTKT 669
           +      + + YT +++S +A  L +    +E+ L  L++++ +  KID +  +  FT +
Sbjct: 361 LIE----LVKPYTSVKLSLLAKKLGVSISIIEQALVGLIIDERVNGKIDMVNEV--FTIS 414

Query: 670 KDATEIVNDWSYNINQLLSLIKK 738
           +    I N    ++ +L +   K
Sbjct: 415 QPKNTIHNQLVEDVQKLWNTATK 437
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,272,385
Number of Sequences: 369166
Number of extensions: 1750320
Number of successful extensions: 5400
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5383
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)