Planaria EST Database


DrC_02295

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02295
         (873 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26459|APPC_ECOLI  Cytochrome bd-II oxidase subunit I           35   0.27 
sp|P09045|NU1M_LOCMI  NADH-ubiquinone oxidoreductase chain 1...    33   1.4  
sp|P09391|GLPG_ECOLI  Protein glpG                                 32   1.8  
sp|P55190|YBAS_BACSU  Hypothetical protein ybaS                    32   3.0  
sp|P48356|LEPR_MOUSE  Leptin receptor precursor (LEP-R) (OB ...    31   3.9  
sp|P45191|PSTC_HAEIN  Phosphate transport system permease pr...    31   5.1  
>sp|P26459|APPC_ECOLI Cytochrome bd-II oxidase subunit I
          Length = 514

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +1

Query: 289 WKLVVLGIVTFIWIPLTLGLLINLCVLSPIRVPLDKSIILSFWENW--MFGMMHLKIWV- 459
           W+  +  +  F+++PLTLGL+  L ++  I V   K+I       W  +FG ++  + V 
Sbjct: 10  WQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFG-INFALGVA 68

Query: 460 ----MVLLFGPRWWF 492
               M   FG  W F
Sbjct: 69  TGLTMEFQFGTNWSF 83
>sp|P09045|NU1M_LOCMI NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
           1)
          Length = 313

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
 Frame = +1

Query: 16  FGLRFLTLILCVLISTVAFSTVI---LIAPVYIGR---NVLYIGGFDVFCDLVSLLCGLC 177
           F L FL LI+CVLIS VAF T++   ++  ++I +    V ++G    F D + L C   
Sbjct: 8   FVLNFLLLIICVLIS-VAFLTLMERKVLGYIHIRKGPNKVGFLGIPQPFSDAIKLFCKEQ 66

Query: 178 SIAFLTKASYSLY 216
            I F+  ++Y LY
Sbjct: 67  PIPFM--SNYFLY 77
>sp|P09391|GLPG_ECOLI Protein glpG
          Length = 276

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = +1

Query: 283 ILWKLVVLGIVTFIWIPLTLGLLINLCVLSPIRVPLDKSIILSFWENWMFGMMHLKIWVM 462
           + W +++  +V FI     + +L +  V+  +  P D ++   FW  +   +MH  +  M
Sbjct: 96  VTWVMMIACVVVFI----AMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSL--M 149

Query: 463 VLLFGPRWWF 492
            +LF   WW+
Sbjct: 150 HILFNLLWWW 159
>sp|P55190|YBAS_BACSU Hypothetical protein ybaS
          Length = 283

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +1

Query: 280 LILWKLVVLGIVTFIW-------IPLTLGLLINLCVLSPIRVPLDKSIILSFWENWMFGM 438
           L L  ++  GI + IW       + LTL +++   VLSP+ VPL  S++           
Sbjct: 66  LTLAVVIPTGITSLIWAAMYKGNVGLTLSIILVDTVLSPLIVPLSLSLLAG-------AQ 118

Query: 439 MHLKIWVMV 465
           +H+ +W M+
Sbjct: 119 VHMDVWGMM 127
>sp|P48356|LEPR_MOUSE Leptin receptor precursor (LEP-R) (OB receptor) (OB-R) (B219)
          Length = 1162

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 346 LLINLCVLSPIRVPLDKSIILSFWENWMFGMMHLKIWVMVLLFGPRWWFRERLDIIEQE 522
           L+ +LC +  ++V   +   L +W NW      L + V V + GP +W +   D+ ++E
Sbjct: 597 LVSDLCAVYVVQVRCRRLDGLGYWSNWSSPAYTLVMDVKVPMRGPEFWRKMDGDVTKKE 655
>sp|P45191|PSTC_HAEIN Phosphate transport system permease protein pstC
          Length = 315

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
 Frame = +1

Query: 277 ILILWKLVVLGIVTFIWIPLTLGLLINLCVLSP--IRVPLDKSI-ILSFWENWMFGMMHL 447
           I IL  L+  GI  FI +P++ G+ I L  L+P  ++ P+  +I +L+   + ++GM  L
Sbjct: 72  IPILGTLITAGIALFIAVPISFGIAIFLTELAPNWLKRPISIAIEMLAAIPSIIYGMWGL 131

Query: 448 KIWV 459
            ++V
Sbjct: 132 FVFV 135
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,196,459
Number of Sequences: 369166
Number of extensions: 1870271
Number of successful extensions: 5060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5051
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)