Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_B15
(873 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26459|APPC_ECOLI Cytochrome bd-II oxidase subunit I 35 0.27
sp|P09045|NU1M_LOCMI NADH-ubiquinone oxidoreductase chain 1... 33 1.4
sp|P09391|GLPG_ECOLI Protein glpG 32 1.8
sp|P55190|YBAS_BACSU Hypothetical protein ybaS 32 3.0
sp|P48356|LEPR_MOUSE Leptin receptor precursor (LEP-R) (OB ... 31 3.9
sp|P45191|PSTC_HAEIN Phosphate transport system permease pr... 31 5.1
>sp|P26459|APPC_ECOLI Cytochrome bd-II oxidase subunit I
Length = 514
Score = 35.0 bits (79), Expect = 0.27
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = +1
Query: 289 WKLVVLGIVTFIWIPLTLGLLINLCVLSPIRVPLDKSIILSFWENW--MFGMMHLKIWV- 459
W+ + + F+++PLTLGL+ L ++ I V K+I W +FG ++ + V
Sbjct: 10 WQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFG-INFALGVA 68
Query: 460 ----MVLLFGPRWWF 492
M FG W F
Sbjct: 69 TGLTMEFQFGTNWSF 83
>sp|P09045|NU1M_LOCMI NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 313
Score = 32.7 bits (73), Expect = 1.4
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +1
Query: 16 FGLRFLTLILCVLISTVAFSTVI---LIAPVYIGR---NVLYIGGFDVFCDLVSLLCGLC 177
F L FL LI+CVLIS VAF T++ ++ ++I + V ++G F D + L C
Sbjct: 8 FVLNFLLLIICVLIS-VAFLTLMERKVLGYIHIRKGPNKVGFLGIPQPFSDAIKLFCKEQ 66
Query: 178 SIAFLTKASYSLY 216
I F+ ++Y LY
Sbjct: 67 PIPFM--SNYFLY 77
>sp|P09391|GLPG_ECOLI Protein glpG
Length = 276
Score = 32.3 bits (72), Expect = 1.8
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +1
Query: 283 ILWKLVVLGIVTFIWIPLTLGLLINLCVLSPIRVPLDKSIILSFWENWMFGMMHLKIWVM 462
+ W +++ +V FI + +L + V+ + P D ++ FW + +MH + M
Sbjct: 96 VTWVMMIACVVVFI----AMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSL--M 149
Query: 463 VLLFGPRWWF 492
+LF WW+
Sbjct: 150 HILFNLLWWW 159
>sp|P55190|YBAS_BACSU Hypothetical protein ybaS
Length = 283
Score = 31.6 bits (70), Expect = 3.0
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 280 LILWKLVVLGIVTFIW-------IPLTLGLLINLCVLSPIRVPLDKSIILSFWENWMFGM 438
L L ++ GI + IW + LTL +++ VLSP+ VPL S++
Sbjct: 66 LTLAVVIPTGITSLIWAAMYKGNVGLTLSIILVDTVLSPLIVPLSLSLLAG-------AQ 118
Query: 439 MHLKIWVMV 465
+H+ +W M+
Sbjct: 119 VHMDVWGMM 127
>sp|P48356|LEPR_MOUSE Leptin receptor precursor (LEP-R) (OB receptor) (OB-R) (B219)
Length = 1162
Score = 31.2 bits (69), Expect = 3.9
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 346 LLINLCVLSPIRVPLDKSIILSFWENWMFGMMHLKIWVMVLLFGPRWWFRERLDIIEQE 522
L+ +LC + ++V + L +W NW L + V V + GP +W + D+ ++E
Sbjct: 597 LVSDLCAVYVVQVRCRRLDGLGYWSNWSSPAYTLVMDVKVPMRGPEFWRKMDGDVTKKE 655
>sp|P45191|PSTC_HAEIN Phosphate transport system permease protein pstC
Length = 315
Score = 30.8 bits (68), Expect = 5.1
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 277 ILILWKLVVLGIVTFIWIPLTLGLLINLCVLSP--IRVPLDKSI-ILSFWENWMFGMMHL 447
I IL L+ GI FI +P++ G+ I L L+P ++ P+ +I +L+ + ++GM L
Sbjct: 72 IPILGTLITAGIALFIAVPISFGIAIFLTELAPNWLKRPISIAIEMLAAIPSIIYGMWGL 131
Query: 448 KIWV 459
++V
Sbjct: 132 FVFV 135
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,196,459
Number of Sequences: 369166
Number of extensions: 1870271
Number of successful extensions: 5060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5051
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)