Planaria EST Database


DrC_02292

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02292
         (902 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27895|CIN8_YEAST  Kinesin-like protein CIN8                    33   1.1  
sp|Q04956|ATX1_PLAFA  Probable cation-transporting ATPase 1        32   2.4  
sp|Q9RQ47|ILVC_BUCMH  Ketol-acid reductoisomerase (Acetohydr...    31   4.1  
sp|P22620|ABRA_PLAFC  101 kDa malaria antigen (P101) (Acidic...    31   4.1  
sp|Q71ZW7|EFP_LISMF  Elongation factor P (EF-P) >gi|54040752...    31   5.4  
sp|Q8MA10|RPOC2_CHAGL  DNA-directed RNA polymerase beta'' ch...    30   7.1  
>sp|P27895|CIN8_YEAST Kinesin-like protein CIN8
          Length = 1038

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
 Frame = +2

Query: 92   LLMERSKDFDVIIIPGN---PGIKEYYDNFVYCLNSGFKSNNTNCNIYVKNHIGHDNNFH 262
            +L E  K F+V+I   +      +++Y N    L S     N N   Y+KNH   +N+  
Sbjct: 732  ILNESPKFFNVVIEKIDIIRVDFQKFYKNIAENL-SDISEENNNMKQYLKNHFFKNNHQE 790

Query: 263  EKNYSI-----------NDQIDHHKKYLKTKIESNKKIIL 349
              N  +           N+ +++ KK L   ++ NKK+I+
Sbjct: 791  LLNRHVDSTYENIEKRTNEFVENFKKVLNDHLDENKKLIM 830
>sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1
          Length = 1956

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
 Frame = +2

Query: 152 KEYYDNFVYCLNSGFKSNNTNCNIYVKN-----------HIGHDNNFHEKNYSINDQIDH 298
           KEYY N  YC  +    N++ C+ Y+ N           +I H  + ++KN  IN + + 
Sbjct: 600 KEYYTNNTYC--NDLHINDSTCSSYLLNSETKDAYCEYYNIDHLCDINKKNMDINSKNEL 657

Query: 299 HKKYLKTKI 325
             KY K ++
Sbjct: 658 MGKYSKNEL 666
>sp|Q9RQ47|ILVC_BUCMH Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 490

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = +2

Query: 569 KCKFILWFLGRKIHSSVIKGTLVLFSRHVMRQVLFMAKTEMDQVKECDWEIIRENYEKIF 748
           K K I + L RK    +I G    FS+++M    F  K    Q+KE   EI   ++EK  
Sbjct: 291 KLKKIFFPLFRKHMDDIISGE---FSKNMM----FDWKNNDQQLKEWRTEIQNTDFEKCN 343

Query: 749 MYYGRNDHWCPESLYFD----MVARFKS 820
           +YY +     PE  YFD    MVA  K+
Sbjct: 344 IYYKQ----IPEQEYFDNGLLMVAILKA 367
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
          Length = 743

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +2

Query: 152 KEYYDNFVYCLNSGFKSNNTNCNIYVKNHIGHDNNFHEKNYSINDQIDHHK--KYLKTKI 325
           K+Y D+  Y ++ GFKS N + N       G  NN  E    +N    H K  K LK  I
Sbjct: 83  KQYTDSVTYLMD-GFKSANNSAN------NGKKNNAEEMKNLVNFLQSHKKLIKALKKNI 135

Query: 326 ES--NKKIIL 349
           ES  NKK ++
Sbjct: 136 ESIQNKKHLI 145
>sp|Q71ZW7|EFP_LISMF Elongation factor P (EF-P)
 sp|P64032|EFP_LISMO Elongation factor P (EF-P)
 sp|P64033|EFP_LISIN Elongation factor P (EF-P)
          Length = 185

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 233 NHIGHDNNFHEKNYSINDQIDHHKKYLKTKIESNKKIILIGHSIG 367
           NH+  DN  +E+     DQI H  K+LK  +E N  I+  G +IG
Sbjct: 79  NHVFMDNESYEQIELPEDQIAHELKFLKENMEIN-IIMYQGETIG 122
>sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
            polymerase beta'' subunit) (RNA polymerase beta''
            subunit)
          Length = 1373

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 693  SISVFAMN--NTCLITCRENNTNVPLITLEWIFRPRNQRINLHFILKVVKLQNKNKINDV 520
            SI VF  N  N  L  C  N TN      E +   RN   NL+F  K   L NKNK N  
Sbjct: 840  SIDVFFKNLRNRFLNFCFSNQTN-----FEKMLSKRNFHKNLYFCFKT--LNNKNKENLA 892

Query: 519  NHRKSRD 499
            N +K++D
Sbjct: 893  N-KKNKD 898
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,903,483
Number of Sequences: 369166
Number of extensions: 1815859
Number of successful extensions: 5092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5017
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)