Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_02292 (902 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P27895|CIN8_YEAST Kinesin-like protein CIN8 33 1.1 sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1 32 2.4 sp|Q9RQ47|ILVC_BUCMH Ketol-acid reductoisomerase (Acetohydr... 31 4.1 sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 31 4.1 sp|Q71ZW7|EFP_LISMF Elongation factor P (EF-P) >gi|54040752... 31 5.4 sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase beta'' ch... 30 7.1
>sp|P27895|CIN8_YEAST Kinesin-like protein CIN8 Length = 1038 Score = 33.1 bits (74), Expect = 1.1 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 14/100 (14%) Frame = +2 Query: 92 LLMERSKDFDVIIIPGN---PGIKEYYDNFVYCLNSGFKSNNTNCNIYVKNHIGHDNNFH 262 +L E K F+V+I + +++Y N L S N N Y+KNH +N+ Sbjct: 732 ILNESPKFFNVVIEKIDIIRVDFQKFYKNIAENL-SDISEENNNMKQYLKNHFFKNNHQE 790 Query: 263 EKNYSI-----------NDQIDHHKKYLKTKIESNKKIIL 349 N + N+ +++ KK L ++ NKK+I+ Sbjct: 791 LLNRHVDSTYENIEKRTNEFVENFKKVLNDHLDENKKLIM 830
>sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1 Length = 1956 Score = 32.0 bits (71), Expect = 2.4 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 11/69 (15%) Frame = +2 Query: 152 KEYYDNFVYCLNSGFKSNNTNCNIYVKN-----------HIGHDNNFHEKNYSINDQIDH 298 KEYY N YC + N++ C+ Y+ N +I H + ++KN IN + + Sbjct: 600 KEYYTNNTYC--NDLHINDSTCSSYLLNSETKDAYCEYYNIDHLCDINKKNMDINSKNEL 657 Query: 299 HKKYLKTKI 325 KY K ++ Sbjct: 658 MGKYSKNEL 666
>sp|Q9RQ47|ILVC_BUCMH Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 490 Score = 31.2 bits (69), Expect = 4.1 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Frame = +2 Query: 569 KCKFILWFLGRKIHSSVIKGTLVLFSRHVMRQVLFMAKTEMDQVKECDWEIIRENYEKIF 748 K K I + L RK +I G FS+++M F K Q+KE EI ++EK Sbjct: 291 KLKKIFFPLFRKHMDDIISGE---FSKNMM----FDWKNNDQQLKEWRTEIQNTDFEKCN 343 Query: 749 MYYGRNDHWCPESLYFD----MVARFKS 820 +YY + PE YFD MVA K+ Sbjct: 344 IYYKQ----IPEQEYFDNGLLMVAILKA 367
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen) Length = 743 Score = 31.2 bits (69), Expect = 4.1 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Frame = +2 Query: 152 KEYYDNFVYCLNSGFKSNNTNCNIYVKNHIGHDNNFHEKNYSINDQIDHHK--KYLKTKI 325 K+Y D+ Y ++ GFKS N + N G NN E +N H K K LK I Sbjct: 83 KQYTDSVTYLMD-GFKSANNSAN------NGKKNNAEEMKNLVNFLQSHKKLIKALKKNI 135 Query: 326 ES--NKKIIL 349 ES NKK ++ Sbjct: 136 ESIQNKKHLI 145
>sp|Q71ZW7|EFP_LISMF Elongation factor P (EF-P) sp|P64032|EFP_LISMO Elongation factor P (EF-P) sp|P64033|EFP_LISIN Elongation factor P (EF-P) Length = 185 Score = 30.8 bits (68), Expect = 5.4 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = +2 Query: 233 NHIGHDNNFHEKNYSINDQIDHHKKYLKTKIESNKKIILIGHSIG 367 NH+ DN +E+ DQI H K+LK +E N I+ G +IG Sbjct: 79 NHVFMDNESYEQIELPEDQIAHELKFLKENMEIN-IIMYQGETIG 122
>sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 30.4 bits (67), Expect = 7.1 Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = -3 Query: 693 SISVFAMN--NTCLITCRENNTNVPLITLEWIFRPRNQRINLHFILKVVKLQNKNKINDV 520 SI VF N N L C N TN E + RN NL+F K L NKNK N Sbjct: 840 SIDVFFKNLRNRFLNFCFSNQTN-----FEKMLSKRNFHKNLYFCFKT--LNNKNKENLA 892 Query: 519 NHRKSRD 499 N +K++D Sbjct: 893 N-KKNKD 898
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,903,483 Number of Sequences: 369166 Number of extensions: 1815859 Number of successful extensions: 5092 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 4738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5017 length of database: 68,354,980 effective HSP length: 110 effective length of database: 48,034,130 effective search space used: 9126484700 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)