Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_A03
(902 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27895|CIN8_YEAST Kinesin-like protein CIN8 33 1.1
sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1 32 2.4
sp|Q9RQ47|ILVC_BUCMH Ketol-acid reductoisomerase (Acetohydr... 31 4.1
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 31 4.1
sp|Q71ZW7|EFP_LISMF Elongation factor P (EF-P) >gi|54040752... 31 5.4
sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase beta'' ch... 30 7.1
>sp|P27895|CIN8_YEAST Kinesin-like protein CIN8
Length = 1038
Score = 33.1 bits (74), Expect = 1.1
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Frame = +2
Query: 92 LLMERSKDFDVIIIPGN---PGIKEYYDNFVYCLNSGFKSNNTNCNIYVKNHIGHDNNFH 262
+L E K F+V+I + +++Y N L S N N Y+KNH +N+
Sbjct: 732 ILNESPKFFNVVIEKIDIIRVDFQKFYKNIAENL-SDISEENNNMKQYLKNHFFKNNHQE 790
Query: 263 EKNYSI-----------NDQIDHHKKYLKTKIESNKKIIL 349
N + N+ +++ KK L ++ NKK+I+
Sbjct: 791 LLNRHVDSTYENIEKRTNEFVENFKKVLNDHLDENKKLIM 830
>sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1
Length = 1956
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Frame = +2
Query: 152 KEYYDNFVYCLNSGFKSNNTNCNIYVKN-----------HIGHDNNFHEKNYSINDQIDH 298
KEYY N YC + N++ C+ Y+ N +I H + ++KN IN + +
Sbjct: 600 KEYYTNNTYC--NDLHINDSTCSSYLLNSETKDAYCEYYNIDHLCDINKKNMDINSKNEL 657
Query: 299 HKKYLKTKI 325
KY K ++
Sbjct: 658 MGKYSKNEL 666
>sp|Q9RQ47|ILVC_BUCMH Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
Length = 490
Score = 31.2 bits (69), Expect = 4.1
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +2
Query: 569 KCKFILWFLGRKIHSSVIKGTLVLFSRHVMRQVLFMAKTEMDQVKECDWEIIRENYEKIF 748
K K I + L RK +I G FS+++M F K Q+KE EI ++EK
Sbjct: 291 KLKKIFFPLFRKHMDDIISGE---FSKNMM----FDWKNNDQQLKEWRTEIQNTDFEKCN 343
Query: 749 MYYGRNDHWCPESLYFD----MVARFKS 820
+YY + PE YFD MVA K+
Sbjct: 344 IYYKQ----IPEQEYFDNGLLMVAILKA 367
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 31.2 bits (69), Expect = 4.1
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 152 KEYYDNFVYCLNSGFKSNNTNCNIYVKNHIGHDNNFHEKNYSINDQIDHHK--KYLKTKI 325
K+Y D+ Y ++ GFKS N + N G NN E +N H K K LK I
Sbjct: 83 KQYTDSVTYLMD-GFKSANNSAN------NGKKNNAEEMKNLVNFLQSHKKLIKALKKNI 135
Query: 326 ES--NKKIIL 349
ES NKK ++
Sbjct: 136 ESIQNKKHLI 145
>sp|Q71ZW7|EFP_LISMF Elongation factor P (EF-P)
sp|P64032|EFP_LISMO Elongation factor P (EF-P)
sp|P64033|EFP_LISIN Elongation factor P (EF-P)
Length = 185
Score = 30.8 bits (68), Expect = 5.4
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 233 NHIGHDNNFHEKNYSINDQIDHHKKYLKTKIESNKKIILIGHSIG 367
NH+ DN +E+ DQI H K+LK +E N I+ G +IG
Sbjct: 79 NHVFMDNESYEQIELPEDQIAHELKFLKENMEIN-IIMYQGETIG 122
>sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1373
Score = 30.4 bits (67), Expect = 7.1
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 693 SISVFAMN--NTCLITCRENNTNVPLITLEWIFRPRNQRINLHFILKVVKLQNKNKINDV 520
SI VF N N L C N TN E + RN NL+F K L NKNK N
Sbjct: 840 SIDVFFKNLRNRFLNFCFSNQTN-----FEKMLSKRNFHKNLYFCFKT--LNNKNKENLA 892
Query: 519 NHRKSRD 499
N +K++D
Sbjct: 893 N-KKNKD 898
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,903,483
Number of Sequences: 369166
Number of extensions: 1815859
Number of successful extensions: 5092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5017
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)