Planaria EST Database


DrC_02287

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02287
         (245 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P58335|ANTR2_HUMAN  Anthrax toxin receptor 2 precursor (C...    29   2.9  
sp|Q6DFX2|ANTR2_MOUSE  Anthrax toxin receptor 2 precursor          29   3.8  
sp|Q9UKT9|AIOL_HUMAN  Zinc finger protein Aiolos                   29   3.8  
sp|P19385|LYS_BPCP7  Lysozyme (Endolysin) (Muramidase) (CP-7...    29   3.8  
sp|P08358|VP26_NPVAC  Protein p26                                  28   5.0  
sp|P28745|RCC1_SCHPO  Protein pim1 (Poly(A)+ RNA transport p...    28   5.0  
sp|Q8IZT6|ASPM_HUMAN  Abnormal spindle-like microcephaly-ass...    28   5.0  
sp|Q5FJI3|RL28_LACAC  50S ribosomal protein L28                    28   5.0  
sp|P62294|ASPM_PONPY  Abnormal spindle-like microcephaly-ass...    28   5.0  
sp|P62293|ASPM_PANTR  Abnormal spindle-like microcephaly-ass...    28   5.0  
>sp|P58335|ANTR2_HUMAN Anthrax toxin receptor 2 precursor (Capillary morphogenesis gene 2
           protein) (CMG-2)
          Length = 489

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 90  GNKGNYEDSHSTEPIDNGIKPIPEEKELPTDSTPVKVENTAKSETTDKVTAV 245
           G+KG+ E+    E   N +  IPEE E P    P + + T +   T   T +
Sbjct: 397 GDKGSTEEGARLEKAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQTKWYTPI 448
>sp|Q6DFX2|ANTR2_MOUSE Anthrax toxin receptor 2 precursor
          Length = 487

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 90  GNKGNYEDSHSTEPIDNGIKPIPEEKELPTDSTPVKVENTAKSETTDKVTAV 245
           G+KG+ E+    E   N +  +PEE E+P  S P +   T ++  T   T +
Sbjct: 397 GDKGSTEEGARLEKAKNAVVMVPEE-EIPIPSRPPRPRPTHQAPQTKWYTPI 447
>sp|Q9UKT9|AIOL_HUMAN Zinc finger protein Aiolos
          Length = 509

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 114 SHSTEPIDNGIKPIPEEKELPTDSTPVKVENTAKSETTDK 233
           SH  E +D+G  P  E++++  DS  VK E + + E   K
Sbjct: 34  SHEMENVDSGEGPANEDEDIGDDSMKVKDEYSERDENVLK 73
>sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7 lysin)
          Length = 342

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 22/70 (31%), Positives = 30/70 (42%)
 Frame = +3

Query: 18  QHPNEIYNAVIFMKDYEEKHEKFIGNKGNYEDSHSTEPIDNGIKPIPEEKELPTDSTPVK 197
           Q PN ++ A   + D     E F    G     +S+ P D  I  + +EKE       + 
Sbjct: 143 QFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEKE-----DNIN 197

Query: 198 VENTAKSETT 227
            ENT KS TT
Sbjct: 198 NENTLKSLTT 207
>sp|P08358|VP26_NPVAC Protein p26
          Length = 240

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 6   EEKTQHPNEIYNAVIFMKDYEEKHEKFIGNKGNYEDSHSTEP 131
           E++ + PN + + V+F KD E    +   NKG+YE  H   P
Sbjct: 190 EQENKTPNALESCVLFYKDSE---IRITYNKGDYEIMHLRMP 228
>sp|P28745|RCC1_SCHPO Protein pim1 (Poly(A)+ RNA transport protein 2)
          Length = 539

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 120 STEPIDNGIKPIPE-EKELPTDSTPVKVENTAKSETTDKVTA 242
           S EP+ NGIK  PE EK+L T+ T  K +++  ++    VT+
Sbjct: 476 SEEPVANGIKSEPENEKKLKTEETS-KTDDSPVTDAKPDVTS 516
>sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-associated protein (Abnormal
           spindle protein homolog) (Asp homolog)
          Length = 3477

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 72  KHEKFIGNKGNYEDSHSTEPIDNGI--KPIPEEKELPTDSTPVKVENTAKSE 221
           +HEK I N+   ED HS  PI + I  K    + E+   ST   V    KS+
Sbjct: 527 EHEKVINNQKEKEDFHSYLPIIDPILSKSKSYKNEVTPSSTTASVARKRKSD 578
>sp|Q5FJI3|RL28_LACAC 50S ribosomal protein L28
          Length = 61

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +3

Query: 57  KDYEEKHEKFIGNKGNYEDSHSTEPIDNGIKPIPEEKELPTDSTPVKVENTAKSETTDKV 236
           KDY    +   GNK     SHS  P     KP  ++  +  D  P +V  + K+  + KV
Sbjct: 3   KDYVTGKKTTFGNKR----SHSLNPTRRAWKPNLQKVRILVDGKPKRVWVSTKALKSGKV 58

Query: 237 TAV 245
           T V
Sbjct: 59  TRV 61
>sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associated protein homolog
          Length = 3471

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 72  KHEKFIGNKGNYEDSHSTEPIDNGI--KPIPEEKELPTDSTPVKVENTAKSE 221
           +HEK I N+   ED HS  PI + I  K    + E+   ST   V    KS+
Sbjct: 521 EHEKVINNQKEKEDFHSYLPIIDPILSKSKSYKNEVTPSSTTASVARKRKSD 572
>sp|P62293|ASPM_PANTR Abnormal spindle-like microcephaly-associated protein homolog
          Length = 3477

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 72  KHEKFIGNKGNYEDSHSTEPIDNGI--KPIPEEKELPTDSTPVKVENTAKSE 221
           +HEK I N+   ED HS  PI + I  K    + E+   ST   V    KS+
Sbjct: 527 EHEKVINNQKEKEDFHSYLPIIDPILSKSKSYKNEVTPSSTTASVARKRKSD 578
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,334,804
Number of Sequences: 369166
Number of extensions: 361020
Number of successful extensions: 1298
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)