Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_O06
(245 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58335|ANTR2_HUMAN Anthrax toxin receptor 2 precursor (C... 29 2.9
sp|Q6DFX2|ANTR2_MOUSE Anthrax toxin receptor 2 precursor 29 3.8
sp|Q9UKT9|AIOL_HUMAN Zinc finger protein Aiolos 29 3.8
sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7... 29 3.8
sp|P08358|VP26_NPVAC Protein p26 28 5.0
sp|P28745|RCC1_SCHPO Protein pim1 (Poly(A)+ RNA transport p... 28 5.0
sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-ass... 28 5.0
sp|Q5FJI3|RL28_LACAC 50S ribosomal protein L28 28 5.0
sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-ass... 28 5.0
sp|P62293|ASPM_PANTR Abnormal spindle-like microcephaly-ass... 28 5.0
>sp|P58335|ANTR2_HUMAN Anthrax toxin receptor 2 precursor (Capillary morphogenesis gene 2
protein) (CMG-2)
Length = 489
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 90 GNKGNYEDSHSTEPIDNGIKPIPEEKELPTDSTPVKVENTAKSETTDKVTAV 245
G+KG+ E+ E N + IPEE E P P + + T + T T +
Sbjct: 397 GDKGSTEEGARLEKAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQTKWYTPI 448
>sp|Q6DFX2|ANTR2_MOUSE Anthrax toxin receptor 2 precursor
Length = 487
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 90 GNKGNYEDSHSTEPIDNGIKPIPEEKELPTDSTPVKVENTAKSETTDKVTAV 245
G+KG+ E+ E N + +PEE E+P S P + T ++ T T +
Sbjct: 397 GDKGSTEEGARLEKAKNAVVMVPEE-EIPIPSRPPRPRPTHQAPQTKWYTPI 447
>sp|Q9UKT9|AIOL_HUMAN Zinc finger protein Aiolos
Length = 509
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 114 SHSTEPIDNGIKPIPEEKELPTDSTPVKVENTAKSETTDK 233
SH E +D+G P E++++ DS VK E + + E K
Sbjct: 34 SHEMENVDSGEGPANEDEDIGDDSMKVKDEYSERDENVLK 73
>sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7 lysin)
Length = 342
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +3
Query: 18 QHPNEIYNAVIFMKDYEEKHEKFIGNKGNYEDSHSTEPIDNGIKPIPEEKELPTDSTPVK 197
Q PN ++ A + D E F G +S+ P D I + +EKE +
Sbjct: 143 QFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEKE-----DNIN 197
Query: 198 VENTAKSETT 227
ENT KS TT
Sbjct: 198 NENTLKSLTT 207
>sp|P08358|VP26_NPVAC Protein p26
Length = 240
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 6 EEKTQHPNEIYNAVIFMKDYEEKHEKFIGNKGNYEDSHSTEP 131
E++ + PN + + V+F KD E + NKG+YE H P
Sbjct: 190 EQENKTPNALESCVLFYKDSE---IRITYNKGDYEIMHLRMP 228
>sp|P28745|RCC1_SCHPO Protein pim1 (Poly(A)+ RNA transport protein 2)
Length = 539
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 120 STEPIDNGIKPIPE-EKELPTDSTPVKVENTAKSETTDKVTA 242
S EP+ NGIK PE EK+L T+ T K +++ ++ VT+
Sbjct: 476 SEEPVANGIKSEPENEKKLKTEETS-KTDDSPVTDAKPDVTS 516
>sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-associated protein (Abnormal
spindle protein homolog) (Asp homolog)
Length = 3477
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 72 KHEKFIGNKGNYEDSHSTEPIDNGI--KPIPEEKELPTDSTPVKVENTAKSE 221
+HEK I N+ ED HS PI + I K + E+ ST V KS+
Sbjct: 527 EHEKVINNQKEKEDFHSYLPIIDPILSKSKSYKNEVTPSSTTASVARKRKSD 578
>sp|Q5FJI3|RL28_LACAC 50S ribosomal protein L28
Length = 61
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 57 KDYEEKHEKFIGNKGNYEDSHSTEPIDNGIKPIPEEKELPTDSTPVKVENTAKSETTDKV 236
KDY + GNK SHS P KP ++ + D P +V + K+ + KV
Sbjct: 3 KDYVTGKKTTFGNKR----SHSLNPTRRAWKPNLQKVRILVDGKPKRVWVSTKALKSGKV 58
Query: 237 TAV 245
T V
Sbjct: 59 TRV 61
>sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associated protein homolog
Length = 3471
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 72 KHEKFIGNKGNYEDSHSTEPIDNGI--KPIPEEKELPTDSTPVKVENTAKSE 221
+HEK I N+ ED HS PI + I K + E+ ST V KS+
Sbjct: 521 EHEKVINNQKEKEDFHSYLPIIDPILSKSKSYKNEVTPSSTTASVARKRKSD 572
>sp|P62293|ASPM_PANTR Abnormal spindle-like microcephaly-associated protein homolog
Length = 3477
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 72 KHEKFIGNKGNYEDSHSTEPIDNGI--KPIPEEKELPTDSTPVKVENTAKSE 221
+HEK I N+ ED HS PI + I K + E+ ST V KS+
Sbjct: 527 EHEKVINNQKEKEDFHSYLPIIDPILSKSKSYKNEVTPSSTTASVARKRKSD 578
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,334,804
Number of Sequences: 369166
Number of extensions: 361020
Number of successful extensions: 1298
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)