Planaria EST Database


DrC_02280

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02280
         (451 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PRA3|Y042_UREPA  Hypothetical protein UU042                   34   0.13 
sp|Q9USP5|GPI8_SCHPO  GPI-anchor transamidase precursor (GPI...    30   2.5  
sp|Q9I685|SAHH_PSEAE  Adenosylhomocysteinase (S-adenosyl-L-h...    30   3.2  
sp|P44596|HAP1_HAEIN  Adhesion and penetration protein precu...    28   9.4  
>sp|Q9PRA3|Y042_UREPA Hypothetical protein UU042
          Length = 138

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -2

Query: 207 VSNVNTGFNLVSSTSPIILCHGMEMYVTETLRPTEHAFLLSLNQYQA*LNDCPQEE-VI* 31
           + N N G +L + T P+++CHG+ M +   +     AF+   N Y+A ++   + E +I 
Sbjct: 69  IHNQNYGLSLYALTLPVLICHGINMLLNLII-----AFIKINNVYKAKIHKMNENEYIIF 123

Query: 30  LYSSKSSENM 1
            Y+ K  E +
Sbjct: 124 AYAQKLKEKV 133
>sp|Q9USP5|GPI8_SCHPO GPI-anchor transamidase precursor (GPI transamidase)
          Length = 380

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +2

Query: 29  SQMTSSWGQSFSQAWYWFKERRKACSVGLNVSVTYISIPWHRIIGDVLD------TKLKP 190
           S  T++W    S + +WF  R  A  +G+  SV  + IP  +II  + D        L P
Sbjct: 21  SSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLFP 80

Query: 191 VLTFDTIPR 217
              FD   R
Sbjct: 81  GTVFDNADR 89
>sp|Q9I685|SAHH_PSEAE Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase)
           (AdoHcyase)
          Length = 469

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = -1

Query: 220 FSWNRIECQHRFQFGVEH-ITDNSVPWNGNVCY*N----IEANRTRFPSLLEPIPGLTER 56
           F+W   E +  +++ +E  I  +  PW+ N+   +     E    ++P +LE I G+TE 
Sbjct: 106 FAWKG-ETEEEYEWCIEQTILKDGQPWDANMVLDDGGDLTEILHKKYPQMLERIHGITEE 164

Query: 55  LSPGRGHLTVLIK 17
            + G   L  ++K
Sbjct: 165 TTTGVHRLLDMLK 177
>sp|P44596|HAP1_HAEIN Adhesion and penetration protein precursor
          Length = 1409

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 429 TKHNINSKDRQIIIVSHSIVSY-RVTVISYKSITRPLVNKSINKL 298
           T   I + D   +IV+H+      +T+   +SIT P   K+INKL
Sbjct: 529 TFKRIQNTDEGAMIVNHNTTQVANITITGNESITAPSNKKNINKL 573
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,036,297
Number of Sequences: 369166
Number of extensions: 932557
Number of successful extensions: 2269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2269
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)