Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_L16
(451 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9PRA3|Y042_UREPA Hypothetical protein UU042 34 0.13
sp|Q9USP5|GPI8_SCHPO GPI-anchor transamidase precursor (GPI... 30 2.5
sp|Q9I685|SAHH_PSEAE Adenosylhomocysteinase (S-adenosyl-L-h... 30 3.2
sp|P44596|HAP1_HAEIN Adhesion and penetration protein precu... 28 9.4
>sp|Q9PRA3|Y042_UREPA Hypothetical protein UU042
Length = 138
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 207 VSNVNTGFNLVSSTSPIILCHGMEMYVTETLRPTEHAFLLSLNQYQA*LNDCPQEE-VI* 31
+ N N G +L + T P+++CHG+ M + + AF+ N Y+A ++ + E +I
Sbjct: 69 IHNQNYGLSLYALTLPVLICHGINMLLNLII-----AFIKINNVYKAKIHKMNENEYIIF 123
Query: 30 LYSSKSSENM 1
Y+ K E +
Sbjct: 124 AYAQKLKEKV 133
>sp|Q9USP5|GPI8_SCHPO GPI-anchor transamidase precursor (GPI transamidase)
Length = 380
Score = 30.0 bits (66), Expect = 2.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +2
Query: 29 SQMTSSWGQSFSQAWYWFKERRKACSVGLNVSVTYISIPWHRIIGDVLD------TKLKP 190
S T++W S + +WF R A +G+ SV + IP +II + D L P
Sbjct: 21 SSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLFP 80
Query: 191 VLTFDTIPR 217
FD R
Sbjct: 81 GTVFDNADR 89
>sp|Q9I685|SAHH_PSEAE Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase)
(AdoHcyase)
Length = 469
Score = 29.6 bits (65), Expect = 3.2
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = -1
Query: 220 FSWNRIECQHRFQFGVEH-ITDNSVPWNGNVCY*N----IEANRTRFPSLLEPIPGLTER 56
F+W E + +++ +E I + PW+ N+ + E ++P +LE I G+TE
Sbjct: 106 FAWKG-ETEEEYEWCIEQTILKDGQPWDANMVLDDGGDLTEILHKKYPQMLERIHGITEE 164
Query: 55 LSPGRGHLTVLIK 17
+ G L ++K
Sbjct: 165 TTTGVHRLLDMLK 177
>sp|P44596|HAP1_HAEIN Adhesion and penetration protein precursor
Length = 1409
Score = 28.1 bits (61), Expect = 9.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 429 TKHNINSKDRQIIIVSHSIVSY-RVTVISYKSITRPLVNKSINKL 298
T I + D +IV+H+ +T+ +SIT P K+INKL
Sbjct: 529 TFKRIQNTDEGAMIVNHNTTQVANITITGNESITAPSNKKNINKL 573
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,036,297
Number of Sequences: 369166
Number of extensions: 932557
Number of successful extensions: 2269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2269
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)