Planaria EST Database


DrC_02274

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02274
         (695 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O42237|SEM3E_CHICK  Semaphorin-3E precursor (Collapsin-5)...    32   1.2  
sp|Q9RPQ5|HIS4_THEET  1-(5-phosphoribosyl)-5-[(5-phosphoribo...    31   3.6  
sp|Q8H0T9|KTNB1_ARATH  Katanin p80 WD40-containing subunit B...    30   4.7  
sp|O15041|SEM3E_HUMAN  Semaphorin-3E precursor                     30   4.7  
sp|Q90665|SEM4D_CHICK  Semaphorin-4D (Collapsin-4) (COLL-4)        30   4.7  
>sp|O42237|SEM3E_CHICK Semaphorin-3E precursor (Collapsin-5) (COLL-5)
          Length = 785

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 363 YNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIKI 542
           YN   +AV+   A    +  +D++F+ TDNG    + T+YN   ES     L  ++  K+
Sbjct: 435 YNLKQIAVDRVEA---EDGQYDVLFIGTDNGIVLKVITIYNQETESMEEVILEELQVFKV 491
>sp|Q9RPQ5|HIS4_THEET 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 237

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +3

Query: 369 FPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIKIQG 548
           +P V ++D R +   +  FD V + +DN    G+     G +   ++D L+  RT +IQ 
Sbjct: 4   YPAVDIKDGRCVRLVQGEFDKVTVYSDNPVEMGLKWERMGAQYLHVVD-LDGARTGQIQN 62

Query: 549 KPLFGEL 569
            P+  E+
Sbjct: 63  TPIISEM 69
>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40-containing subunit B1 homolog 1
          Length = 837

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 471 ATLYNGIEESQIIDCLNHIRTIKIQGKPLFGELMWLADVQVD--ADQPPEKKVRCLME*V 644
           A L +G+++   +     ++ +++ G P++  L   A V VD  A+Q  E+  RC +E  
Sbjct: 746 ALLGSGMDQHLSVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAEQRIERYSRCFVELE 805

Query: 645 LINVCL 662
            +  CL
Sbjct: 806 KVKACL 811
>sp|O15041|SEM3E_HUMAN Semaphorin-3E precursor
          Length = 775

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 363 YNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIK 539
           YN   +AV+   A    +  +D++F+ TDNG    + T+YN   ES     L  ++  K
Sbjct: 431 YNLKQIAVDRVEA---EDGQYDVLFIGTDNGIVLKVITIYNQEMESMEEVILEELQIFK 486
>sp|Q90665|SEM4D_CHICK Semaphorin-4D (Collapsin-4) (COLL-4)
          Length = 295

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 369 FPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNG---IEESQIIDCLNHIRTIK 539
           +  + V+  RAL  + +I+D++F+ TD G      +  NG   IEE+Q+      ++T+ 
Sbjct: 193 YTQIVVDRVRAL--NGTIYDVMFISTDQGALHKAISYENGMHIIEETQLFPKFEPVQTLL 250

Query: 540 IQGK 551
           +  K
Sbjct: 251 LSSK 254
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,010,072
Number of Sequences: 369166
Number of extensions: 1723611
Number of successful extensions: 4038
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4037
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)