Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J24
(695 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O42237|SEM3E_CHICK Semaphorin-3E precursor (Collapsin-5)... 32 1.2
sp|Q9RPQ5|HIS4_THEET 1-(5-phosphoribosyl)-5-[(5-phosphoribo... 31 3.6
sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40-containing subunit B... 30 4.7
sp|O15041|SEM3E_HUMAN Semaphorin-3E precursor 30 4.7
sp|Q90665|SEM4D_CHICK Semaphorin-4D (Collapsin-4) (COLL-4) 30 4.7
>sp|O42237|SEM3E_CHICK Semaphorin-3E precursor (Collapsin-5) (COLL-5)
Length = 785
Score = 32.3 bits (72), Expect = 1.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 363 YNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIKI 542
YN +AV+ A + +D++F+ TDNG + T+YN ES L ++ K+
Sbjct: 435 YNLKQIAVDRVEA---EDGQYDVLFIGTDNGIVLKVITIYNQETESMEEVILEELQVFKV 491
>sp|Q9RPQ5|HIS4_THEET 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase
(Phosphoribosylformimino-5-aminoimidazole carboxamide
ribotide isomerase)
Length = 237
Score = 30.8 bits (68), Expect = 3.6
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 369 FPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIKIQG 548
+P V ++D R + + FD V + +DN G+ G + ++D L+ RT +IQ
Sbjct: 4 YPAVDIKDGRCVRLVQGEFDKVTVYSDNPVEMGLKWERMGAQYLHVVD-LDGARTGQIQN 62
Query: 549 KPLFGEL 569
P+ E+
Sbjct: 63 TPIISEM 69
>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40-containing subunit B1 homolog 1
Length = 837
Score = 30.4 bits (67), Expect = 4.7
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 471 ATLYNGIEESQIIDCLNHIRTIKIQGKPLFGELMWLADVQVD--ADQPPEKKVRCLME*V 644
A L +G+++ + ++ +++ G P++ L A V VD A+Q E+ RC +E
Sbjct: 746 ALLGSGMDQHLSVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAEQRIERYSRCFVELE 805
Query: 645 LINVCL 662
+ CL
Sbjct: 806 KVKACL 811
>sp|O15041|SEM3E_HUMAN Semaphorin-3E precursor
Length = 775
Score = 30.4 bits (67), Expect = 4.7
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 363 YNFPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNGIEESQIIDCLNHIRTIK 539
YN +AV+ A + +D++F+ TDNG + T+YN ES L ++ K
Sbjct: 431 YNLKQIAVDRVEA---EDGQYDVLFIGTDNGIVLKVITIYNQEMESMEEVILEELQIFK 486
>sp|Q90665|SEM4D_CHICK Semaphorin-4D (Collapsin-4) (COLL-4)
Length = 295
Score = 30.4 bits (67), Expect = 4.7
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 369 FPMVAVEDERALLYHESIFDIVFMDTDNGGRCGIATLYNG---IEESQIIDCLNHIRTIK 539
+ + V+ RAL + +I+D++F+ TD G + NG IEE+Q+ ++T+
Sbjct: 193 YTQIVVDRVRAL--NGTIYDVMFISTDQGALHKAISYENGMHIIEETQLFPKFEPVQTLL 250
Query: 540 IQGK 551
+ K
Sbjct: 251 LSSK 254
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,010,072
Number of Sequences: 369166
Number of extensions: 1723611
Number of successful extensions: 4038
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4037
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)