Planaria EST Database


DrC_02269

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02269
         (367 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55145|ARMET_HUMAN  ARMET protein precursor (Arginine-ric...   123   2e-28
sp|Q9CXI5|ARMET_MOUSE  ARMET protein precursor                    120   7e-28
sp|Q9XZ63|ARMET_DROME  ARMET-like protein precursor               111   6e-25
sp|Q9N3B0|ARMET_CAEEL  ARMET-like protein precursor               105   4e-23
sp|Q61660|FOXJ1_MOUSE  Forkhead box protein J1 (Forkhead-rel...    30   1.7  
sp|O74435|CDC31_SCHPO  Cell division control protein 31            30   2.3  
sp|Q6MEF3|LEPA_PARUW  GTP-binding protein lepA                     29   3.0  
sp|P36049|EBP2_YEAST  rRNA-processing protein EBP2 (EBNA1-bi...    29   3.9  
sp|Q92I41|DAPF_RICCN  Diaminopimelate epimerase (DAP epimerase)    28   5.1  
sp|Q9ZDB7|DAPF_RICPR  Diaminopimelate epimerase (DAP epimerase)    28   6.6  
>sp|P55145|ARMET_HUMAN ARMET protein precursor (Arginine-rich protein)
          Length = 179

 Score =  123 bits (308), Expect = 2e-28
 Identities = 57/91 (62%), Positives = 71/91 (78%)
 Frame = +3

Query: 24  LSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGEEC 203
           +S+PL+  +P EK+CEKLK  DSQICELKY+K IDL+ ++L K RVK+LKKIL+ WGE C
Sbjct: 89  VSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETC 148

Query: 204 KGCTEKSDFIRLINEKMPIHDPKAAEQRNKM 296
           KGC EKSD+IR INE MP + PKAA  R  +
Sbjct: 149 KGCAEKSDYIRKINELMPKYAPKAASARTDL 179
>sp|Q9CXI5|ARMET_MOUSE ARMET protein precursor
          Length = 179

 Score =  120 bits (302), Expect = 7e-28
 Identities = 56/91 (61%), Positives = 70/91 (76%)
 Frame = +3

Query: 24  LSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGEEC 203
           +S+PL+  +P EK+CEKLK  DSQICELKY+  IDL+ ++L K RVK+LKKIL+ WGE C
Sbjct: 89  VSKPLAHHIPVEKICEKLKKKDSQICELKYDNQIDLSTVDLKKLRVKELKKILDDWGEMC 148

Query: 204 KGCTEKSDFIRLINEKMPIHDPKAAEQRNKM 296
           KGC EKSD+IR INE MP + PKAA  R  +
Sbjct: 149 KGCAEKSDYIRKINELMPKYAPKAASARTDL 179
>sp|Q9XZ63|ARMET_DROME ARMET-like protein precursor
          Length = 173

 Score =  111 bits (277), Expect = 6e-25
 Identities = 49/78 (62%), Positives = 59/78 (75%)
 Frame = +3

Query: 24  LSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGEEC 203
           LS+PLSW MPAEK+CEKLK  D+QIC+L+YEK IDL  ++L K +V+DLKKIL  W E C
Sbjct: 89  LSKPLSWSMPAEKICEKLKKKDAQICDLRYEKQIDLNSVDLKKLKVRDLKKILNDWDESC 148

Query: 204 KGCTEKSDFIRLINEKMP 257
            GC EK DFI+ I E  P
Sbjct: 149 DGCLEKGDFIKRIEELKP 166
>sp|Q9N3B0|ARMET_CAEEL ARMET-like protein precursor
          Length = 168

 Score =  105 bits (261), Expect = 4e-23
 Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
 Frame = +3

Query: 24  LSQPLSWGMPAEKVC-EKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGEE 200
           +++PLSW MP EKVC EKLK  D+QICELKY+KP+D   I+L K RVK+LK IL  WGE 
Sbjct: 83  VTKPLSWSMPTEKVCLEKLKGKDAQICELKYDKPLDWKTIDLKKMRVKELKNILGEWGEV 142

Query: 201 CKGCTEKSDFIRLINEKMP 257
           CKGCTEK++ I+ I E  P
Sbjct: 143 CKGCTEKAELIKRIEELKP 161
>sp|Q61660|FOXJ1_MOUSE Forkhead box protein J1 (Forkhead-related protein FKHL13)
           (Hepatocyte nuclear factor 3 forkhead homolog 4) (HFH-4)
          Length = 421

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 6   SARGKHLSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTG 137
           +  G+H++ P +WG PAE+  + L   ++ +     + P D +G
Sbjct: 347 TVHGRHINCPATWGPPAEQAADSLDFDETFLATSFLQHPWDESG 390
>sp|O74435|CDC31_SCHPO Cell division control protein 31
          Length = 176

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 135 GINLNKARVKDLKKILESWGEECKGCTEKSDFIRLINEKMPIHDP 269
           G N  K+ V    KIL  + +  KG  +  DF+R++ EK+   DP
Sbjct: 67  GFNAEKSEVL---KILRDFDKTGKGYLQMEDFVRVMTEKIVERDP 108
>sp|Q6MEF3|LEPA_PARUW GTP-binding protein lepA
          Length = 602

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +3

Query: 18  KHLSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGE 197
           ++L   ++ GM    VC K + MD++   L Y  P++    + N  ++K + K   S+  
Sbjct: 418 EYLGAIMNLGMDKRGVCTKTETMDARRLLLTYRLPLNEIITDFND-KLKSITKGYGSFDY 476

Query: 198 ECKGCTEKSDFIRL---INEK 251
           E   C E S+ I+L   +NE+
Sbjct: 477 EF-DCYEPSEIIKLEIRVNEE 496
>sp|P36049|EBP2_YEAST rRNA-processing protein EBP2 (EBNA1-binding protein homolog)
          Length = 427

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +3

Query: 54  AEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVK----DLKKILESWGEECKG-CTE 218
           AEK+   LK   SQ  ELK E+P  +T  NL K   K    D+KK + +  EE +     
Sbjct: 20  AEKLENDLKKKKSQ--ELKKEEPTIVTASNLKKLEKKEKKADVKKEVAADTEEYQSQALS 77

Query: 219 KSDFIRLINEKMPIHDPKAAEQRNKM 296
           K +  +L  E   + +  A E +  M
Sbjct: 78  KKEKRKLKKELKKMQEQDATEAQKHM 103
>sp|Q92I41|DAPF_RICCN Diaminopimelate epimerase (DAP epimerase)
          Length = 270

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 45  GMPAEKVCEKLKAMDSQIC-ELKYEKPIDLTGINLNKARVKDLKKILESW 191
           G P   +  KL+  D +I  E    K +   G+N+N A VKD K  L  W
Sbjct: 154 GNPHVVIFSKLEPQDQKIVGERLQAKELFADGVNVNFAEVKDNKIYLSVW 203
>sp|Q9ZDB7|DAPF_RICPR Diaminopimelate epimerase (DAP epimerase)
          Length = 270

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 45  GMPAEKVCEKLKAMDSQICELKYE-KPIDLTGINLNKARVKDLKKILESW 191
           G P   +  KL+  D  I   K + K +   G+N+N A VKD K  L  W
Sbjct: 154 GNPHLIIFSKLEPQDKTIIGQKLQAKELFADGVNVNFAEVKDNKIYLSVW 203
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,561,610
Number of Sequences: 369166
Number of extensions: 690562
Number of successful extensions: 2295
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2293
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)